Locus 329

Sequence ID X_DroMel_CAF1
Location 1,034,253 – 1,034,373
Length 120
Max. P 0.672429
window501

overview

Window 1

Location 1,034,253 – 1,034,373
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.54
Mean single sequence MFE -25.30
Consensus MFE -3.40
Energy contribution -9.56
Covariance contribution 6.16
Combinations/Pair 1.15
Mean z-score -1.60
Structure conservation index 0.13
SVM decision value 0.29
SVM RNA-class probability 0.672429
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1034253 120 - 22224390
UUCCAACAAUAUUGUAUCUACAUAUGAUCCAGAUUAUUUCUAAUGACCUAUGCAUAUGCGAGUGAUUUACGAGUAAAUACAGUUGUUGCUUGCAUGCGCGUGAAUUAGGGCUUCAUUUAU
..((.......(((.(((.......))).))).......(((((....(((((.((((((((..((..((..((....)).)).))..)))))))).))))).))))))).......... ( -25.30)
>DroSec_CAF1 6005 117 - 1
UUCCAACAUGAUUGUAUCUACAUACGAUCCAGAUUGUUUCUAAUGACAUAUGCAUAUGCGAGUGAUUUACGAGUAAAUACAUU---UGCUUGCAUGCGUGUGAAUUAGGGCUUCAUUUAU
.........((((((((....))))))))..((..(((.(((((..(((((((((..((((((((((((....))))).))))---)))....))))))))).)))))))).))...... ( -32.50)
>DroSim_CAF1 5416 117 - 1
UUCCAACAUGAUUGUAUCUACAUACGAUCCAGAUUGUUUCUAAUGACAUAUGCAUAUGCGAGUGAUUUACGAGUAAAUACAGU---UGCUUGCAUGCGUGUGAAUUAGGGCUUCAUUUAU
.........((((((((....))))))))..((..(((.(((((..((((((((..((((((..(((.............)))---..)))))))))))))).)))))))).))...... ( -31.22)
>DroEre_CAF1 5612 103 - 1
UUUCAACCAGAUUGUAUCA----AUGAUCCUGACUCUUCCUAAUGAUAUAUGCAUAUCUGAGUAAUCUACGAGUAAAUACAGU---UGGC----------UGAAUUAGGGCUUCAUUUAU
..................(----((((((((((.((..((...((.(((.(((......((....)).....))).)))))..---.)).----------.)).))))))..)))))... ( -16.30)
>DroYak_CAF1 6026 96 - 1
UUUCAACAAGUUUGUAUCA----AUGAUGCUGAUUCCU---GUAUCCUUAUGCAUAUCUGCGUAAUUAACGAGCAAAUACUGU---U--------------GAAUUAGGGUUUCAUUUAU
.(((((((.((((((.((.----..(((((........---))))).(((((((....))))))).....))))))))..)))---)--------------)))................ ( -21.20)
>consensus
UUCCAACAAGAUUGUAUCUACAUAUGAUCCAGAUUCUUUCUAAUGACAUAUGCAUAUGCGAGUGAUUUACGAGUAAAUACAGU___UGCUUGCAUGCG_GUGAAUUAGGGCUUCAUUUAU
.........(((((((......)))))))..((....(((((((....(((((.((((((((((....((...........))...)))))))))).))))).)))))))..))...... ( -3.40 =  -9.56 +   6.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:53 2006