| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,751,451 – 8,751,544 |
| Length | 93 |
| Max. P | 0.561674 |
| Location | 8,751,451 – 8,751,544 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -17.38 |
| Energy contribution | -18.75 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8751451 93 + 22224390 GUUUUGAAGAGGAGGCUGAAGCUAGAGAUGAGCGCUUCGCUGCGUGCCUCGCCGUGACAAAAUAAUCGAAAGAUAUCGAUUAAUACUAACAUC--- (((.((..((((.(((.(((((...........)))))))).....))))..)).)))....(((((((......)))))))...........--- ( -23.20) >DroSec_CAF1 4298 92 + 1 GU-UUGAAGAGGAGGCUGAAGCUAGAGAUGAGCGCUGCGCGGCGUGACUCUUCGUGACAAAAUAAUCGAAAGAUAUCGAUUAGUAAUAAAAUC--- ((-((((((((..(((....)))........(((((....)))))..))))))).)))....(((((((......)))))))...........--- ( -25.00) >DroEre_CAF1 4117 96 + 1 GUUUUGAAGAGAGGAGUGUGCCUAGAGAUGAGCGCUUCCCUGCGUGACUCUUCGUGACAAAAUAGUCGAAAGAUAUCGAUAAGUGUUAAUAUCAAA (((.((((((((((......)))........((((......))))..))))))).)))......(((....)))...((((........))))... ( -24.50) >DroYak_CAF1 4284 96 + 1 UUUUUGAAGAGAGAGGUGAGGCUAGAGAUGAGCGCUUGUCUGCGUGACUCUACGUGACAAAAUAAUCGAAAGACAUCGAUUAGUGUUAUUAUCAAA ..(((((((((.((((..(((((.......))).))..))).)....))))..((((((...(((((((......))))))).))))))..))))) ( -24.80) >consensus GUUUUGAAGAGAAGGCUGAAGCUAGAGAUGAGCGCUUCGCUGCGUGACUCUUCGUGACAAAAUAAUCGAAAGAUAUCGAUUAGUAUUAAUAUC___ (((.(((((((..(((....)))........((((......))))..))))))).)))....(((((((......))))))).............. (-17.38 = -18.75 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:39 2006