Locus 3287

Sequence ID X_DroMel_CAF1
Location 8,741,981 – 8,742,073
Length 92
Max. P 0.500000
window5383

overview

Window 3

Location 8,741,981 – 8,742,073
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 93.16
Mean single sequence MFE -13.76
Consensus MFE -11.68
Energy contribution -11.40
Covariance contribution -0.28
Combinations/Pair 1.13
Mean z-score -1.22
Structure conservation index 0.85
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8741981 92 + 22224390
AAAAGAAAGCAGACAUCGGGGAAUCGAAGAGGCAUAAAAACAGCUUGAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAACACGUUAUAG
...........((.(((((((...(....((((.........))))....)..))))))))).............................. ( -12.90)
>DroSec_CAF1 22014 90 + 1
AAAAGAAAGCAGACAUCG--GAAUCGAAGAGGCAUGAAAACAGCCUUAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAGCACGUUAUAG
....(((....(((((((--....))).(((((.((....)))))))....))))....))).............................. ( -13.20)
>DroSim_CAF1 22762 90 + 1
AAAAGAAAGCAGACAUCG--GAAUCGAAGAGGCAUGAAAACAGCCUUAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAGCACGUUAUAG
....(((....(((((((--....))).(((((.((....)))))))....))))....))).............................. ( -13.20)
>DroEre_CAF1 22322 89 + 1
AAAAGAAAGCAGACAUCG--GAAUCGAACAGGCAUAAAAGCAGCCUGAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAACAUGAUAAA-
....(((....(((((((--....))).(((((.........)))))....))))....)))..............((((....))))...- ( -15.10)
>DroYak_CAF1 23072 89 + 1
AAAAGAAAGCAGACAUCG--GAAUCGAACAGGCAUUAAAACAGCCUGAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAACACGAUAUA-
....(((....(((((((--....))).(((((.........)))))....))))....)))..............(((......)))...- ( -14.40)
>consensus
AAAAGAAAGCAGACAUCG__GAAUCGAAGAGGCAUAAAAACAGCCUGAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAACACGUUAUAG
....(((....(((((((......))).(((((.........)))))....))))....))).............................. (-11.68 = -11.40 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:38 2006