Locus 3286

Sequence ID X_DroMel_CAF1
Location 8,735,652 – 8,735,749
Length 97
Max. P 0.882152
window5382

overview

Window 2

Location 8,735,652 – 8,735,749
Length 97
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 71.81
Mean single sequence MFE -17.51
Consensus MFE -10.26
Energy contribution -10.86
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.59
SVM decision value 0.92
SVM RNA-class probability 0.882152
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8735652 97 + 22224390
AGUUGCCAGCGAUCAUCGCAUGUCAGGGGCG---CCCCCCCCCCUUUCAAACCACCCUCCCCCUUCCACACACACAAUAAAA------U--AGACCCAUCAUGGGAUU
.((((...(((.....))).((..(((((..---......)))))..)).........................))))....------.--...(((.....)))... ( -18.50)
>DroSec_CAF1 15989 89 + 1
AGUUACCAGCGAUCAUCGCAUGUCAGGAGCAUCACCUCCCCCCCUUUCAACC-ACC--ACACCUCCC--------AUGAAAA------U--AGACCCAUCAUGGGAUU
........(((.....)))......((((......)))).............-...--.....((((--------((((...------.--.......)))))))).. ( -18.90)
>DroSim_CAF1 16530 89 + 1
AGUUGCCAGCGAUCAUCGCAUGUCAGGGGCAUCCCCUCCCCCCCUUUCAACC-CCC--ACCCCUCCC--------AUAAAAA------U--AGACCCAUCAUGGAAUU
.....((((((.....)))(((..(((((.......................-...--.)))))..)--------)).....------.--..........))).... ( -15.23)
>DroEre_CAF1 16201 98 + 1
AGUUGCCAGCGAUCAUCGCAUGUCAGGGGCGUCC-GUCCCCCUCUAUCACUC-CUUC-CCCCCUCCC-AACACAAAAAAAAAUAAUAUUAACUACCC------GGAUU
.((((...(((.....)))......(((((....-)))))............-....-........)-)))..........................------..... ( -15.40)
>DroYak_CAF1 16797 97 + 1
ACUUGCCAGCGAUCAUCGCAUGUCAGGGGCGUCC-GUCCCC-UUUUUCGCUC-UCUC-CCCCCCUCC-ACCACCGAAAAAAA----AUU--CAACCCAUGAUGGGAUU
...((.(((((.....))).)).))(((((....-))))).-(((((((...-....-.........-.....)))))))..----...--...(((.....)))... ( -19.50)
>consensus
AGUUGCCAGCGAUCAUCGCAUGUCAGGGGCGUCCCCUCCCCCCCUUUCAACC_ACCC_CCCCCUCCC___CAC__AAAAAAA______U__AGACCCAUCAUGGGAUU
........(((.....)))......((((........)))).....................................................(((.....)))... (-10.26 = -10.86 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:37 2006