| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,732,262 – 8,732,381 |
| Length | 119 |
| Max. P | 0.905309 |
| Location | 8,732,262 – 8,732,381 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.77 |
| Mean single sequence MFE | -16.70 |
| Consensus MFE | -15.71 |
| Energy contribution | -15.60 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8732262 119 - 22224390 CACUAAACCAGGUUAAAUUAAUCGCUUGACUCAGAGAUUAGAAAUUUCUAUGAAUUUAUCAGUUUUGUGUUUAAUUUUUCCGUUUACUGUACACUUUUUUUUUUGUUUUUUUUUUGUGU ((.(((((..((..(((((((.(((..(((..((((((.....)))))).(((.....))))))..))).)))))))..))))))).)).((((.....................)))) ( -18.80) >DroSim_CAF1 13182 113 - 1 CACUAAACCAGGUUAAAUUAAUCGCUUGACUCAGAGAUUAGAAAUUUCUAUGAAUUUAUUAGUUUCGUAUUUAAUUUUUCCGUUUAAUGUACACUUUUUUCCU------UUUUUUUUGU ((.(((((..((..(((((((..((..((((...((((((((....))))...))))...))))..))..)))))))..))))))).))..............------.......... ( -14.70) >DroYak_CAF1 13335 103 - 1 CACUAAACCAGGCUAAAUUAAUUGCUUGACUCAGAGAUUAGAAAUUUCUAUGAGUUUAUCAGUUUUGUAUUUAAUUUUCCCGUUUAUAUUGUACUUUAUU----------------UUU ...(((((..((..(((((((.(((..(((..((((((.....)))))).(((.....))))))..))).)))))))..)))))))..............----------------... ( -16.60) >consensus CACUAAACCAGGUUAAAUUAAUCGCUUGACUCAGAGAUUAGAAAUUUCUAUGAAUUUAUCAGUUUUGUAUUUAAUUUUUCCGUUUAAUGUACACUUUUUU__U______UUUUUU_UGU ...(((((..((..(((((((.(((..((((...((((((((....))))...))))...))))..))).)))))))..)))))))................................. (-15.71 = -15.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:36 2006