Locus 3282

Sequence ID X_DroMel_CAF1
Location 8,725,964 – 8,726,061
Length 97
Max. P 0.508430
window5377

overview

Window 7

Location 8,725,964 – 8,726,061
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 86.31
Mean single sequence MFE -17.16
Consensus MFE -12.21
Energy contribution -13.21
Covariance contribution 1.00
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.71
SVM decision value -0.05
SVM RNA-class probability 0.508430
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8725964 97 + 22224390
UGGCAGUUUGACAACAAACUGCAACCAACACUGAGCACCAUAAACAUUAAGAUACAGAUACAGAUACAGAUACAGCUAUACAUUAGAUUCCAUAUUU
..((((((((....)))))))).......................................(((((..((.....(((.....)))..))..))))) ( -12.00)
>DroSec_CAF1 6483 84 + 1
UGGCAGUUUGACAACAAACUGCAACCGACGCUGAGCACCAUAAACAUUGAGAUUCAGAUACAGAUACA------------CA-UGGUGUCCAUAUUU
..((((((((....)))))))).........((..((((((....(((...((....))...)))...------------.)-)))))..))..... ( -19.50)
>DroSim_CAF1 6458 79 + 1
UGGCAGUUUGACAACAAACUGCAACCGACGCUGAGCACCAUAAACAUUGAGAU------ACAGAUACA------------CAUUGGUGUCCAUAUUU
..((((((((....)))))))).........((..(((((.....(((.....------...)))...------------...)))))..))..... ( -18.70)
>DroEre_CAF1 6667 91 + 1
UGGCAGUUUGACAACAAACUGCAACCGACACUGAGCACCAUAAACAUUGAGAUACAGAUACAAAUACAGAUAC------ACAUUUGAGUCCAUAUUU
..((((((((....))))))))....(((.(((.....((.......)).....))).........(((((..------..))))).)))....... ( -15.90)
>DroYak_CAF1 6845 91 + 1
UGGCAGUUUGACAACAAACUGCAACCGACACUGAGCACCAUAAACAUUGAGAUUCAGAUACAGAUACAGAUAC------ACAUUGGUGUCCAUAUUU
..((((((((....))))))))........(((((...((.......))...)))))....(((((..(((((------......)))))..))))) ( -19.70)
>consensus
UGGCAGUUUGACAACAAACUGCAACCGACACUGAGCACCAUAAACAUUGAGAUACAGAUACAGAUACAGAUAC______ACAUUGGUGUCCAUAUUU
..((((((((....))))))))....((((((((................................................))))))))....... (-12.21 = -13.21 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:32 2006