Locus 3281

Sequence ID X_DroMel_CAF1
Location 8,720,331 – 8,720,451
Length 120
Max. P 0.680133
window5376

overview

Window 6

Location 8,720,331 – 8,720,451
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.56
Mean single sequence MFE -43.15
Consensus MFE -37.61
Energy contribution -37.92
Covariance contribution 0.31
Combinations/Pair 1.21
Mean z-score -1.50
Structure conservation index 0.87
SVM decision value 0.30
SVM RNA-class probability 0.680133
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8720331 120 - 22224390
AUUCUGGCCCUCUGCAUGGGCAACCACGAGCUGUACAUGCGUCGCCGCAAGCCGGACACCAUCGAUGUGCAGCAGAUGAAGGCGCAGGCGCGCGAGGAGAAGAAUGCCAAACAGCAGGAA
.((((...((((..(((((....))....(((((((((.((...(((.....))).......)))))))))))..)))...((((....))))))))...))))(((......))).... ( -39.70)
>DroPse_CAF1 1380 120 - 1
AUCCUGGCCCUCUGUAUGGGCAACCAUGAGCUGUACAUGCGUCGUCGCAAGCCCGACACGAUCGACGUGCAGCAAAUGAAGGCGCAGGCGCGCGAAGAGAAAAAUGCCAAACAGCAGGAG
.(((((.....((((...((((..(((..(((((((.((((....))))....(((.....)))..)))))))..)))...((((....))))...........))))..))))))))). ( -42.00)
>DroWil_CAF1 1172 120 - 1
AUCUUGGCCCUUUGCAUGGGUAACCAUGAGCUGUAUAUGCGUCGUCGCAAGCCCGACACAAUCGAUGUGCAGCAGAUGAAGGCGCAGGCGCGCGAGGAGAAGAAUGCUAAACAGCAAGAG
.((((..((((((.(((((....))))).((((((((((.((((.(....)..)))).)).....))))))))....))))((((....))))..))..)))).((((....)))).... ( -41.00)
>DroMoj_CAF1 1668 120 - 1
AUCCUGGCCCUCUGCAUGGGCAACCAUGAGCUCUACAUGCGUCGUCGCAAGCCCGACACGAUCGAUGUGCAGCAAAUGAAGGCCCAGGCGCGCGAAGAGAAGAACGCCAAACAGCAGGAG
.((((((((.((..(((((....))))).(((.(((((.(((.((((......)))))))....))))).)))....)).))))..((((..(........)..)))).......)))). ( -44.30)
>DroAna_CAF1 976 120 - 1
AUCCUGGCCCUCUGCAUGGGCAACCACGAGCUCUACAUGCGCCGUCGCAAGCCGGACACCAUCGAUGUCCAGCAGAUGAAGGCGCAGGCGCGCGAGGAAAAGAACGCCAAGCAGCAGGAG
.(((((((((.......))))........(((.....((((((.(((...((.(((((.......))))).))...))).))))))((((..(........)..)))).)))..))))). ( -48.00)
>DroPer_CAF1 1400 120 - 1
AUCCUGGCCCUCUGCAUGGGCAACCAUGAGCUGUACAUGCGUCGUCGCAAGCCCGACACGAUCGACGUGCAGCAAAUGAAGGCGCAGGCGCGCGAAGAGAAAAAUGCCAAACAGCAGGAG
.((((((((.((..(((((....))))).(((((((.((((....))))....(((.....)))..)))))))....)).)))...((((..(.....).....))))......))))). ( -43.90)
>consensus
AUCCUGGCCCUCUGCAUGGGCAACCAUGAGCUGUACAUGCGUCGUCGCAAGCCCGACACGAUCGAUGUGCAGCAAAUGAAGGCGCAGGCGCGCGAAGAGAAGAAUGCCAAACAGCAGGAG
.((((((((.((..(((((....))))).(((((((.((((....))))....(((.....)))..)))))))....)).)))...((((..(........)..))))......))))). (-37.61 = -37.92 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:32 2006