Locus 328

Sequence ID X_DroMel_CAF1
Location 1,029,431 – 1,029,523
Length 92
Max. P 0.605050
window500

overview

Window 0

Location 1,029,431 – 1,029,523
Length 92
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.21
Mean single sequence MFE -17.49
Consensus MFE -7.11
Energy contribution -7.33
Covariance contribution 0.23
Combinations/Pair 1.45
Mean z-score -2.71
Structure conservation index 0.41
SVM decision value 0.14
SVM RNA-class probability 0.605050
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1029431 92 - 22224390
ACAUUAAAUACUACGGCACCGAUACUC--GGUGCCCACUAUACACACACAAACA---------AAAAAAAUGUCCGCAAUACACAGGCGUUUGUUAUCGAAAA
..............(((((((.....)--))))))...................---------....(((((((.(.......).)))))))........... ( -18.20)
>DroPse_CAF1 6170 84 - 1
ACAUUAAAUUAUAUGGUACCAAUACUCUCAAUACUCACUACGG-----UAGA-A---------AAAAAAAA----GUAAUACAUAAUAAGGUGGUAGCACAUA
.........(((.((.((((..((((........((((....)-----).))-.---------.......)----)))..((........)))))).)).))) (  -9.19)
>DroSec_CAF1 1086 92 - 1
ACAUUAAAUUAUACGGCACCGAUACUC--GGUGCCCACUAUACACACACAAACA---------AAAAAAAUGUCCGCAAUACGCAGGCGUUUGUUAUCGCAAA
..............(((((((.....)--))))))...................---------....(((((((.((.....)).)))))))........... ( -22.30)
>DroSim_CAF1 1087 92 - 1
ACAUUAAAUUAUACGGCACCGAUACUC--GGUGCCCACUAUACACACACAAACA---------AAAAAAAUGUCCGCAAUACGCAGGCGUUUGUUAUCGCAAA
..............(((((((.....)--))))))...................---------....(((((((.((.....)).)))))))........... ( -22.30)
>DroEre_CAF1 1078 91 - 1
ACAUUAAAUUAUACGGCACCGAUACUC--GGUACCCACUAUACACACACAAACA----------AAAAAAAGUCAGUAAUACACAGGCGUUUGUUAUCGCAAA
..............((.((((.....)--))).))...............((((----------((.....(((.((.....)).))).))))))........ ( -12.50)
>DroYak_CAF1 1081 101 - 1
ACAUUAAAUUAUACGGCACCGAUACUC--GGUGCCCACUAUACACACACAAACAGACAAACAAAAAAAAAAGUCAGUAAUACACAGGUGUUAGUUAUCGCAAA
..............(((((((.....)--)))))).((((.((((.........(((..............))).((.....))..))))))))......... ( -20.44)
>consensus
ACAUUAAAUUAUACGGCACCGAUACUC__GGUGCCCACUAUACACACACAAACA_________AAAAAAAAGUCCGCAAUACACAGGCGUUUGUUAUCGCAAA
..............((((((.........))))))....................................(((.((.....)).)))............... ( -7.11 =  -7.33 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:52 2006