Locus 3279

Sequence ID X_DroMel_CAF1
Location 8,719,590 – 8,719,681
Length 91
Max. P 0.578997
window5373

overview

Window 3

Location 8,719,590 – 8,719,681
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.57
Mean single sequence MFE -29.76
Consensus MFE -18.88
Energy contribution -18.85
Covariance contribution -0.03
Combinations/Pair 1.19
Mean z-score -1.53
Structure conservation index 0.63
SVM decision value 0.09
SVM RNA-class probability 0.578997
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8719590 91 + 22224390
UGCUGCGGCGUUGUCGACGCGGCCAGCAGAGCGGCAGCGGCUUCAGCCUACAAAAACGACAAUGUUC------AGUAUAAAGUUGAAC-ACAAAAUGG
(((((.((((((((((..((.(((.((...))))).))(((....)))........)))))))))))------))))...........-......... ( -30.60)
>DroGri_CAF1 4146 94 + 1
UGUUGCGGCGUGGUGGAUGCAGCCAGCAGUGCAGCAGCAGCCUCGGCCUAAACA--AAACGUAAU--CAGAUAAUUGUUAAGAUAAGCGACAAAGGCG
((((((.(((((.(((......))).)).))).))))))......((((..((.--....))...--.......(((((......)))))...)))). ( -23.60)
>DroSec_CAF1 400 91 + 1
UGCUGCGGCGUUGUCGACGCGGCCAGCAGAGCGGCAGCGGCUUCGGCCUACAAAAACGACAAUGUUC------AGUAUAAAGUUGGAC-ACAGAAUGG
(((((.((((((((((..((.(((.((...))))).))(((....)))........)))))))))))------))))...........-......... ( -33.70)
>DroSim_CAF1 400 91 + 1
UGCUGCGGCGUUGUCGACGCGGCCAGCAGAGCGGCAGCGGCUUCGGCCUACAAAAACGAUAAUGUUC------AGUAUACAGAUGGAC-ACAAAAUGG
(((((.((((((((((..((.(((.((...))))).))(((....)))........)))))))))))------))))..((..((...-.))...)). ( -32.00)
>DroEre_CAF1 403 91 + 1
UGCUGCGGCGUUGUGGACGCGGCCAGCAGAGCGGCAGCGGCUUCAGCCUACAAAAAUGAUAAUAUUC------AGUAUAAGGUUGAAC-ACGCAGGCG
((((((.(((((...))))).).)))))...((.(.(((..((((((((.......(((......))------).....)))))))).-.))).).)) ( -32.80)
>DroYak_CAF1 401 91 + 1
UGCUGCGGCGUUGUCGAUGCGGCCAGCAGAGCGGCAGCGGCUUCAGCCUACAAAAAUGACAAUAUUC------AGUAUAAAGUUGAAC-ACGAAAGCA
.(((..(.((((((((.(((.....)))...)))))))).)((((((.........(((......))------).......)))))).-.....))). ( -25.89)
>consensus
UGCUGCGGCGUUGUCGACGCGGCCAGCAGAGCGGCAGCGGCUUCAGCCUACAAAAACGACAAUAUUC______AGUAUAAAGUUGAAC_ACAAAAGCG
.((((.((((((((((..((.....))....))))))).))).))))................................................... (-18.88 = -18.85 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:29 2006