Locus 3275

Sequence ID X_DroMel_CAF1
Location 8,704,216 – 8,704,329
Length 113
Max. P 0.595503
window5368

overview

Window 8

Location 8,704,216 – 8,704,329
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 93.16
Mean single sequence MFE -22.68
Consensus MFE -18.28
Energy contribution -18.52
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.44
Structure conservation index 0.81
SVM decision value 0.12
SVM RNA-class probability 0.595503
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8704216 113 - 22224390
CCCUUUCGCAAAAUCCAGCAUACAUUUCUAUUUAUAUUAAAAAUGAUGAAGUGAAAGUGCAGCGGUCACUCACACACAAUCGGGCAAACACAAACAGGAGGCGAAAUCAAUUA
...((((((....(((..(((.(((((.((.......)).))))))))..(((....(((..((((............)))).)))..))).....))).))))))....... ( -21.40)
>DroSec_CAF1 139549 105 - 1
CCCUUUCGCAAAGUCCAGCAUACAUUUCUAUUUAUAUUAAAAAUGAUGAAGUGAAAGUGCAGCGGUCAGUCAC--UCGAUCGGGCAAA------CAGAAGGCGAAAUCAAUUA
...((((((...((((.((((.((((((...((((.......)))).))))))...))))...((((......--..))))))))...------(....)))))))....... ( -23.60)
>DroSim_CAF1 104455 105 - 1
CCCUUUCGCAAAGUCCAGCAUACAUUUCUAUUUACAUUAAAAAUGAUGAAGUGAAAGUGCAGCGGUCAGUCAC--UCGAUCGGGCAAA------CAGAAGGCGAAAUCAAUUA
...((((((...((((.((...(((((.(((((.(((((....)))))))))).)))))..))((((......--..))))))))...------(....)))))))....... ( -23.80)
>DroEre_CAF1 153971 104 - 1
CCCUUUCGCAAAAUCCAGCAUA-AUUUCUAUUUAUAUUAAAAAUUAUGAAGUGAAAGUGCAGCGGUCAGUCAC--UCGACCGGGCAAA------CAGAAGGCGAAAUCAAUUA
...((((((....(((..((((-((((.((.......)).))))))))..).))...(((..(((((......--..))))).)))..------......))))))....... ( -23.90)
>DroYak_CAF1 146519 105 - 1
CCCUUUCGCAAAAUCCAGCAUACAUUUCUAUUUAUAUUAAAAAUUAUGAAGUGAAAGUGCAGCGGUCAGUCAC--ACGAUCGGGCAAA------CAGAAGGCGAAAUCAAUUA
...((((((........((((.((((((.((((.......))))...))))))...))))..(((((......--..)))))......------......))))))....... ( -20.70)
>consensus
CCCUUUCGCAAAAUCCAGCAUACAUUUCUAUUUAUAUUAAAAAUGAUGAAGUGAAAGUGCAGCGGUCAGUCAC__UCGAUCGGGCAAA______CAGAAGGCGAAAUCAAUUA
...((((((........((((.((((((.((((.......))))...))))))...))))..(((((..........)))))..................))))))....... (-18.28 = -18.52 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:24 2006