Locus 3273

Sequence ID X_DroMel_CAF1
Location 8,699,337 – 8,699,433
Length 96
Max. P 0.816267
window5365

overview

Window 5

Location 8,699,337 – 8,699,433
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -24.77
Consensus MFE -15.66
Energy contribution -15.94
Covariance contribution 0.28
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.63
SVM decision value 0.67
SVM RNA-class probability 0.816267
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8699337 96 - 22224390
ACA-UCGCUGAUUGGGAAUUACCUGUGCCUAGGACGAAACUGUCCUUUUAAGGCAAUCGACUUUCCAAAUCGCAGAGAGUCUGCGAUCGCAGCUGGA
...-..((((.(((((((.......(((((((((((....))))))....)))))......)))))))(((((((.....)))))))..)))).... ( -35.32)
>DroSec_CAF1 134857 83 - 1
ACA-UCGCUGAUUGGGAAUUACCUGUACCUAGGACC-AACUGUCCUUUUAAGGCAAACGACUUUCCAAAUCACAGAGAGUCU------------GGA
...-....(((((.((((.........((((((((.-....)))))....))).........)))).)))))(((.....))------------).. ( -17.47)
>DroSim_CAF1 99795 83 - 1
ACA-UCGCUGAUUGGGAAUUACCUGUGCCUAGGACC-AACUGUCCUUUUAAGGCAAACGACUUUCCAAAUCACAGAGAGUCU------------GGA
...-....(((((.((((.......((((((((((.-....)))))....))))).......)))).)))))(((.....))------------).. ( -23.64)
>DroEre_CAF1 149237 87 - 1
ACA-UGGCUGAUUGGAAAUUACCUGUGCCUAGGACC-AACUGGCCUUUUAAGGCAAUUGACUUUCCAAAUCAAUGCGA--------UCACAACUGGA
..(-(.((((((((((((.......((((((((.((-....)))))....)))))......))))).)))))..)).)--------).......... ( -21.62)
>DroYak_CAF1 141162 79 - 1
AAAGCGGCUGAUUGGGAAUUACCUGUGCCUAGGACC-AACUGGCCUUUUAGGGCAAUCGACUUUCCAAAU-----------------CACAGCUGGA
....((((((.(((((((.......((((((((.((-....)))))....)))))......)))))))..-----------------..)))))).. ( -25.82)
>consensus
ACA_UCGCUGAUUGGGAAUUACCUGUGCCUAGGACC_AACUGUCCUUUUAAGGCAAUCGACUUUCCAAAUCACAGAGAGUCU_____C_CA_CUGGA
...........(((((((.......((((((((((......)))))....)))))......)))))))............................. (-15.66 = -15.94 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:21 2006