| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,687,707 – 8,687,809 |
| Length | 102 |
| Max. P | 0.616080 |
| Location | 8,687,707 – 8,687,809 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.20 |
| Mean single sequence MFE | -28.76 |
| Consensus MFE | -17.38 |
| Energy contribution | -20.22 |
| Covariance contribution | 2.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8687707 102 - 22224390 UACACCUGUUGAACAAAACAGGUGCUGAUCGUUUGU------AUGAUGAAUUUGCAUAUGUUGUCAGCUAGCUGCAGGCAGCUUAAUGUGCAACAUCGAGUGUUUCAC ..((((((((......))))))))...(((((....------)))))(((...(((((((((((((...(((((....)))))...)).)))))))...))))))).. ( -32.10) >DroSec_CAF1 123331 98 - 1 UACACCUGUUGAACAAAACAGGUGCUGAUCGUUUGU------AUGAUGAAUUAGCAUAUGUUGUCAG----CUGUAGGCAGCUUAAUGUGCAACAUCGAGUGUUUCAC .((((((((((.(((.((((.((((((((((((...------..)))).)))))))).))))...((----(((....)))))...))).)))))..).))))..... ( -29.50) >DroEre_CAF1 135095 98 - 1 UACACCUGUUGGACAAACCAGGUGCUGAUCGCUUGU------AUGAUGAAUUUGCAUAUAUUGUCAG----CUGCAGGCAGCUAAAUGUGCAACAUCGAGUGUUUCAC ..((((((((.....)).)))))).(((.((((((.------(((......((((((((......((----(((....)))))..)))))))))))))))))..))). ( -28.80) >DroYak_CAF1 129726 104 - 1 UACACCUGUUGGACAAAACAGGUGCUGAUCGUUGCCAUGAUGAUGAUGAAUUUGCAUAUGUUGUCAG----CUGCAGGCAGCUCAAUGUGCAACAUCGAGUGUUUCAC ..((((((((......)))))))).((((.((((((((((..((((((......))).)))..))((----(((....)))))..))).))))))))).......... ( -33.30) >DroAna_CAF1 112612 88 - 1 AACACCUGUUGGACAAACCGAGCGGCGAUCGUUUAA------AAGAUGAAUUUGCAUAUGUUGUCGG----AUG------GC----UUUGCAACACGGGUACUUUCGG ...((((((..(.(((((((..((((((.(((...(------((......)))....))))))))).----.))------).----)))))...))))))........ ( -20.10) >consensus UACACCUGUUGGACAAAACAGGUGCUGAUCGUUUGU______AUGAUGAAUUUGCAUAUGUUGUCAG____CUGCAGGCAGCUUAAUGUGCAACAUCGAGUGUUUCAC ..((((((((......))))))))...................(((((...((((((((((((((...........))))))...))))))))))))).......... (-17.38 = -20.22 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:20 2006