Locus 3271

Sequence ID X_DroMel_CAF1
Location 8,685,215 – 8,685,324
Length 109
Max. P 0.505368
window5363

overview

Window 3

Location 8,685,215 – 8,685,324
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -24.86
Consensus MFE -18.38
Energy contribution -18.90
Covariance contribution 0.52
Combinations/Pair 1.21
Mean z-score -1.62
Structure conservation index 0.74
SVM decision value -0.06
SVM RNA-class probability 0.505368
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8685215 109 + 22224390
UUUAAGUCGUGCAACAAAUUCAAUAAGCGAAAUCAUGCAGUUGCAAAUGCUCACUGCAGAUAAUGGUGUUCAAAGUGAGUACAAGUCAAAUUGCAGACCACGAAUUACU
..(((.(((((.......(((.......))).((.(((((((((...((((((((...((((....))))...))))))))...))..))))))))).))))).))).. ( -23.40)
>DroSec_CAF1 121581 109 + 1
CUUAAGUCGUGCAACAAAUUCAAUAAGCGAAAUCAUGCAGAUGCAAAUGCUCACUGCAGAUAAUGGUGUUUAAAGUGAGUACAAGUCAAAUUGCAGACCACGAAUUACU
..(((.(((((......(((((.((((((..(((.(((((..((....))...)))))))).....))))))...)))))....(((........)))))))).))).. ( -23.60)
>DroSim_CAF1 86335 109 + 1
CUUAAGUCGUGCAACAAAUUCAAUAAGCGAAAUCAUGCAGAUGCAAAUGCUCACUGCAGAUAAUGGUGUUUAAAGUGAGUACAAGUCAAAUUGCAGACCACGAAUUACU
..(((.(((((......(((((.((((((..(((.(((((..((....))...)))))))).....))))))...)))))....(((........)))))))).))).. ( -23.60)
>DroEre_CAF1 133541 109 + 1
UUUUAGUCGUGCAACCAACUCAACUAGCGAAAUCUUACAGAUGCAAAUGUUCACCGCAGAUAAUGGUGCUUAAAGUGAGAACACGCCAAAUUGCACGCCACGAAUUACU
.....(.(((((((............(((...((((((....((....)).(((((.......)))))......))))))...)))....))))))).).......... ( -19.49)
>DroYak_CAF1 125292 109 + 1
UUUAGGUCGUGCAACAAAUUCAAUAAGCGAAAUCUUGCAAAUGCAAAUGUUCACUGCAGAUAAUGGUGUUUGCAGUGAGUGCAAGUCAAAUUGCAGGCCACGAAUUACU
....((((.(((((............((((....))))...((((....(((((((((((((....))))))))))))))))).......))))))))).......... ( -34.20)
>consensus
UUUAAGUCGUGCAACAAAUUCAAUAAGCGAAAUCAUGCAGAUGCAAAUGCUCACUGCAGAUAAUGGUGUUUAAAGUGAGUACAAGUCAAAUUGCAGACCACGAAUUACU
......(((((......(((((.((((((..(((.(((((..((....))...)))))))).....))))))...)))))....(((........))))))))...... (-18.38 = -18.90 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:20 2006