Locus 327

Sequence ID X_DroMel_CAF1
Location 1,028,528 – 1,028,618
Length 90
Max. P 0.915948
window499

overview

Window 9

Location 1,028,528 – 1,028,618
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -24.03
Consensus MFE -22.43
Energy contribution -22.77
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.93
SVM decision value 1.10
SVM RNA-class probability 0.915948
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1028528 90 - 22224390
UAAUGGGUCAUUUGAUAUAAUAAAGAUGUGAUUGCAAACUCCGAAGAAAGGAGGGGAAUAUAGCCAGGGGACGGUUAUGUCACUGUCCCA
...((((.((..(((((((((......((.(((.(...((((.......)))).).)))...))..(....).))))))))).)).)))) ( -24.90)
>DroSec_CAF1 185 90 - 1
UGAUGGGGCAUUUGAUAUAAUAAAGAUGUGAUUGCAAACUCAGAAGAAAGGAGGGGAAUAUAGCCAGGGGACGGUUAUGUCACUGUCCCA
...(((((((..(.((((.......)))).).)))...)))).......(((.((..((((((((.(....)))))))))..)).))).. ( -23.60)
>DroSim_CAF1 186 90 - 1
UGAUGGGGCAUUUGAUAUAAUAAAGAUGUGAUUGCAAACUCAGAAGAAAGGAGGGGAAUAUAGCCAGGGGACGGUUAUGUCACUGUCCCA
...(((((((..(.((((.......)))).).)))...)))).......(((.((..((((((((.(....)))))))))..)).))).. ( -23.60)
>consensus
UGAUGGGGCAUUUGAUAUAAUAAAGAUGUGAUUGCAAACUCAGAAGAAAGGAGGGGAAUAUAGCCAGGGGACGGUUAUGUCACUGUCCCA
...(((((((..(((((((((......((.(((.(...(((.........))).).)))...))..(....).))))))))).))))))) (-22.43 = -22.77 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:51 2006