Locus 3269

Sequence ID X_DroMel_CAF1
Location 8,681,741 – 8,681,832
Length 91
Max. P 0.549815
window5361

overview

Window 1

Location 8,681,741 – 8,681,832
Length 91
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 86.20
Mean single sequence MFE -34.65
Consensus MFE -29.42
Energy contribution -28.92
Covariance contribution -0.50
Combinations/Pair 1.13
Mean z-score -1.40
Structure conservation index 0.85
SVM decision value 0.03
SVM RNA-class probability 0.549815
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8681741 91 - 22224390
AAUCUCAGUGUCCAGUGCCCAGUGUCCAUUGUCCCGCUGUCCA----------------UUUGUCCGGCUUUUGGUCAUGGUAUUGGAGUUGGAGCUGGAGCAAGAG
...(((..((((((((((((((((.((((.(.((.((((..(.----------------...)..))))....)).))))))))))).))....)))))).)).))) ( -29.20)
>DroSec_CAF1 118109 91 - 1
AAUCUCAGUGUCCAGUGCCCAGUGUCCACUGUCCCGCUGUCCG----------------UAUGUCCGGUUUUUGGUCAUGGUAUUGGAGCUGGAGCUGGAGCAGGAG
..((.((((.((((((..((((((.(((.((.((......(((----------------......))).....)).))))))))))).))))))))))))....... ( -31.80)
>DroSim_CAF1 82841 91 - 1
AAUCUCAGUGUCCAGUGCCCAGUGUCCACUGUCCCGCUGUCCA----------------UAUGUCCGGUUUUUGGUCAUGGUAUUGGAGCUGGAGCUGGAGCAGGAG
..((.((((.((((((..((((((.(((.((.((.((((..(.----------------...)..))))....)).))))))))))).))))))))))))....... ( -32.10)
>DroEre_CAF1 130034 107 - 1
AAUCUCAGUGUCCAGUGCCCAAUGUCCACCGUCCAGCUGUCCAGCUGUCCAGUUGUCCGGUUGUCCGGUUUUUGGUCAUGGUAUUGGAGCUGGAGCUGGAGCUGGAG
....(((((.(((((((((..(((.((((((..((((((..(((((....)))))..))))))..))))....)).)))))))))))))))))(((....))).... ( -45.50)
>consensus
AAUCUCAGUGUCCAGUGCCCAGUGUCCACUGUCCCGCUGUCCA________________UAUGUCCGGUUUUUGGUCAUGGUAUUGGAGCUGGAGCUGGAGCAGGAG
..((.((((.((((((..((((((.(((.((.((.((((..((..................))..))))....)).))))))))))).))))))))))))....... (-29.42 = -28.92 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:17 2006