| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,676,451 – 8,676,549 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 8,676,451 – 8,676,549 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.69 |
| Mean single sequence MFE | -31.24 |
| Consensus MFE | -12.47 |
| Energy contribution | -13.59 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.40 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8676451 98 - 22224390 GUCACCGAUUCGGAUACGGAUCGAGGCAACAUAUUCGGAGGCA-CUGUAUAUAU------AU----AUAUGCAUAUGUGUU----------GUGUAUUGGUUUC-GUUUUGCAGUUCGGC (((..(((((((....)))))))..((((......(((((.((-..((((((((------((----(((....)))))).)----------)))))))).))))-)..)))).....))) ( -25.20) >DroSec_CAF1 112977 102 - 1 GUCGCCGAUUCGGAUACGGAUCGAAG-GACAUAUUCAGGUGCA-CUGUAUAUAUGUACAUAU----AUAUGCAUAUGUGUU----------GCGUAUCGGUUUC-GUUUU-CAGUUGGGC ....((((((.(((.(((((((((.(-.((((((.(((.....-)))...)))))).)....----.((((((.......)----------))))))))).)))-)).))-))))))).. ( -29.20) >DroSim_CAF1 77273 106 - 1 GUCACCGAUUCGGAUACGGAUCGAGG-GACAUAUUCAGGUGCA-CUGUCUAUAUGUAUAUAUGUACAUAUGCAUAUGUGUU----------GUGUAUCGGUUUC-GUUUU-CAGUUGGGC (((.((((((((....))))))).).-))).......((((((-(.(..(((((((((((......)))))))))))..).----------)))))))......-.....-......... ( -32.30) >DroEre_CAF1 124983 99 - 1 GUCCCCGAUUCGGAUACGGAUCGAGG-GACAUAUUCAGGUGCAAGUAUAUAUAUGU----GC----AUAUGCAUAUGUGCG----------GGGCAUUGGUUUC-GUUUU-CAGUUCGGC ((((((((((((....))))))).))-)))..........((........((((((----((----....))))))))(((----------..((....))..)-))...-.......)) ( -35.30) >DroYak_CAF1 116235 110 - 1 GUCCCCGAUUCAGUUACGGAUCGAGG-GACAUAUUCAGGUGCAACUAUAUAUACAU----AU----AUAUGCAUAUGUACAUUUAUGUUGCGUGUACUGGAUUCAGUUUU-CAGUUCGGC (((((((((((......)))))).))-)))..........(((((((.((.(((((----((----......))))))).)).)).))))).((.((((((.......))-)))).)).. ( -34.20) >consensus GUCACCGAUUCGGAUACGGAUCGAGG_GACAUAUUCAGGUGCA_CUGUAUAUAUGU____AU____AUAUGCAUAUGUGUU__________GUGUAUUGGUUUC_GUUUU_CAGUUCGGC (((..(((((((....)))))))....))).......((((((....(((((((((..............))))))))).............))))))...................... (-12.47 = -13.59 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:13 2006