Locus 3264

Sequence ID X_DroMel_CAF1
Location 8,664,658 – 8,664,759
Length 101
Max. P 0.932396
window5352

overview

Window 2

Location 8,664,658 – 8,664,759
Length 101
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 84.74
Mean single sequence MFE -27.92
Consensus MFE -22.88
Energy contribution -23.27
Covariance contribution 0.39
Combinations/Pair 1.10
Mean z-score -2.88
Structure conservation index 0.82
SVM decision value 1.22
SVM RNA-class probability 0.932396
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8664658 101 + 22224390
----------AGACCCCUUUUUUUCUCUCGGUGCAGCCU---ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC
----------...................((((((((..---...(((((....))))).(((((..((((....))))....))))).................)))))))). ( -30.60)
>DroSec_CAF1 101308 101 + 1
----------GUACCCCCUCUUUUCUCUCAGUGCAGCCU---ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC
----------....................(((((((..---...(((((....))))).(((((..((((....))))....))))).................))))))).. ( -27.20)
>DroSim_CAF1 65352 100 + 1
----------AUACCC-AUUUUUUCUCUCGGUGCAGCCU---ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC
----------......-............((((((((..---...(((((....))))).(((((..((((....))))....))))).................)))))))). ( -30.60)
>DroEre_CAF1 113287 89 + 1
----------------------UUCUCCCUGUGCAGCCU---ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC
----------------------........(((((((..---...(((((....))))).(((((..((((....))))....))))).................))))))).. ( -27.00)
>DroYak_CAF1 104779 104 + 1
----------UUACCCCUUUUUUUCUCGCUGUGCAGCCUACUACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC
----------......(((((..((..((((((((((..........))))))))))...(((((..((((....))))....))))).........))..)))))........ ( -27.60)
>DroAna_CAF1 91258 111 + 1
CCACUGGGAAGAGCCCAUUCUUUUCGCCCAAUGCACCCU---CCAUGCCUGCCCAGCUGCAGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCUCCC
...((((((((((......)))))).......(((..(.---....)..)))))))..(((((.....(((....)))((.....))..................))))).... ( -24.50)
>consensus
__________AUACCCCUUUUUUUCUCUCAGUGCAGCCU___ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC
..............................(((((((........(((((....)))))..((((..((((....))))....))))..................))))))).. (-22.88 = -23.27 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:10 2006