Locus 3263

Sequence ID X_DroMel_CAF1
Location 8,661,412 – 8,661,502
Length 90
Max. P 0.757091
window5351

overview

Window 1

Location 8,661,412 – 8,661,502
Length 90
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 64.23
Mean single sequence MFE -17.92
Consensus MFE -11.48
Energy contribution -11.84
Covariance contribution 0.36
Combinations/Pair 1.27
Mean z-score -1.30
Structure conservation index 0.64
SVM decision value 0.49
SVM RNA-class probability 0.757091
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8661412 90 + 22224390
-AAACUGCGAUGGCAACGCGUACGUGUUUAUAGCCACGAAAAGUUGCCAAACAAAACGGAGACCAGCGAAAAACUACGGCACCGAGAA---GUA-----------
-..(((((..(((((((.....((((........))))....)))))))........(....)..))......((.((....)))).)---)).----------- ( -20.90)
>DroGri_CAF1 120041 77 + 1
CGUACUCG-CUGGUAACGCGUACGUGUUUAUGGCCACGAAAAGUUGCCGAACAAAACGAUG-UAAGCAAAAAA-CAAAAA-------------------------
.......(-((....((((((...(((((..(((.((.....)).))))))))..))).))-).)))......-......------------------------- ( -15.80)
>DroWil_CAF1 135354 78 + 1
--------------GACGCGUACGUGUUUACGGCCACGAAAAGUUGCCGCACAAAACGAC--ACAGAGGAAAAAUAAAGAAAAAUGUGCUCGCA-----------
--------------...((((.(((.....((((.((.....)).))))......)))))--...(((.(...((........)).).))))).----------- ( -15.80)
>DroMoj_CAF1 121340 99 + 1
CAUACUGC-UUGGCAACGCGUACGUGUUUAUGGCCACGAAAAGUUGCCGAACAAAACGAUG-CAAGCAAAAAA-AAAGACAGGAAAAA---GUAAGAAUAAGUAA
.....(((-(((.((...(((...(((((..(((.((.....)).))))))))..))).))-)))))).....-..............---.............. ( -20.00)
>DroAna_CAF1 87337 90 + 1
-AAACGGCGAUGGCAACGCGUACGUGUUUAUGGCCACGAAAAGUUGCCAAACAAAACGGAGCAUAGGACAAAAAUACAGCAUACAGCA---CUA-----------
-.....((..(((((((.....((((........))))....)))))))...........((................)).....)).---...----------- ( -17.09)
>consensus
_AAACUGC_AUGGCAACGCGUACGUGUUUAUGGCCACGAAAAGUUGCCGAACAAAACGAAG_AAAGCAAAAAA_UAAAGCA_AAAGAA___GUA___________
..........(((((((.....((((........))))....)))))))........................................................ (-11.48 = -11.84 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:09 2006