Locus 3261

Sequence ID X_DroMel_CAF1
Location 8,649,582 – 8,649,681
Length 99
Max. P 0.991308
window5348

overview

Window 8

Location 8,649,582 – 8,649,681
Length 99
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 83.45
Mean single sequence MFE -26.47
Consensus MFE -21.09
Energy contribution -21.49
Covariance contribution 0.40
Combinations/Pair 1.24
Mean z-score -2.71
Structure conservation index 0.80
SVM decision value 2.26
SVM RNA-class probability 0.991308
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8649582 99 + 22224390
CAUCCUAGGGAUCGCAUUUCGCCGAUCCUUCAAGGGGUUGACUUCCUUUUAAGGACUUUC--GACCGCACUCGACCCUACUUUUCUUAUGUCUUUCUACCA
...((((((((((((.....).))))))))..)))((((((..((((....))))...))--))))......(((..............)))......... ( -23.94)
>DroSec_CAF1 86762 99 + 1
CUAUCUAGGGAUCGCAUUUCUCCGAUCCUUCAGGAGGUUGACUUCCUUUCAAGGACUCUC--GACCGCAGUCGACCCAAUUUUUCUUAAGUCUUUGUAACA
......((((((((........)))))))).((((((....))))))..((((((((.((--(((....)))))..............))))))))..... ( -26.46)
>DroSim_CAF1 50707 99 + 1
CCAUCUAGGGAUCGCAUUUCUCCGAUCCUUCAGGGGGUUGACUUCCUUUCAAGGACUCUC--GACCGCAGUCGACCCUACUUUUCUUAUGUCUUUGUAACA
....((((((((((........)))))))).))((((((((((((((....)))).....--......))))))))))....................... ( -27.80)
>DroEre_CAF1 98694 98 + 1
C-AUCUAGGGAUCGCAUUUCCCCGAUCCUUCAAGGGGCUGGCUUCCAUUCAAGAUCUCUC--GACCGCAGUCAGCCCUACAUUUCUUAUGUUUUUCCACCU
.-....((((((((........))))))))...((((((((((.(...((.((....)).--))..).))))))))))((((.....)))).......... ( -28.30)
>DroYak_CAF1 89422 99 + 1
C-AUCUAGGGAUCGCAUUUC-CCGAUCCUUCAAGGGGUUGGCUGCCAUUCAAGGACUUCAAGCACCGCAGUCAGCCUAACUUUUCUUAUGUUUUCCUACCG
.-....((((((((......-.))))))))....(((((((((((........(....).......)))))))))))........................ ( -25.86)
>consensus
C_AUCUAGGGAUCGCAUUUCUCCGAUCCUUCAAGGGGUUGACUUCCUUUCAAGGACUCUC__GACCGCAGUCGACCCUACUUUUCUUAUGUCUUUCUACCA
......((((((((........))))))))...(((((((((((((......))).............))))))))))....................... (-21.09 = -21.49 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:06 2006