| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,027,918 – 1,028,026 |
| Length | 108 |
| Max. P | 0.957121 |
| Location | 1,027,918 – 1,028,026 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.90 |
| Mean single sequence MFE | -23.21 |
| Consensus MFE | -15.47 |
| Energy contribution | -16.70 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.18 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.957121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1027918 108 - 22224390 AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACCUAAAUAUAUAACCGAAUAAUGCAGAAAUAGGAUACAGAUAUCAAUGAUUAUCACUGACAACGGUUAAAACAUU ........((((((...))))))(((((((.....))))))).((((((.....(((((.....(....).((((........)))).))).)).))))))....... ( -19.40) >DroSec_CAF1 13402 96 - 1 AAUUCUUUGCGACCCUCGGUCGCAUAUUUAAUACUUAAAUA-AUAUCUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCAC-----------ACAACAUU .((((..(((((((...)))))))((((((.....))))))-......)))).........((((((..(((......)))..))))))-----------........ ( -24.20) >DroSim_CAF1 13009 107 - 1 AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACUUAAAUA-AUAUAUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCACUGACAACGGUUAAAACAUG .........(((((....(((((((((((((..........-....)))))).))))...(((((((..(((......)))..))))))))))...)))))....... ( -26.04) >consensus AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACUUAAAUA_AUAUCUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCACUGACAACGGUUAAAACAUU .((((..(((((((...)))))))((((((.....)))))).......))))........(((((((..(((......)))..))))))).................. (-15.47 = -16.70 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:50 2006