| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,646,609 – 8,646,702 |
| Length | 93 |
| Max. P | 0.518763 |
| Location | 8,646,609 – 8,646,702 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 89.49 |
| Mean single sequence MFE | -37.26 |
| Consensus MFE | -30.77 |
| Energy contribution | -30.89 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8646609 93 + 22224390 GCGCUCCCAGUCGGGGAAAAAAGGGUCGGUCCGUGGGGUGGCGGGGGGACUUCUCUUUGCAGGGGUGGCGCUGCAAGGGGGCAGAGCUGCAAA ((((((((.....)))).....(((((..(((((......)))))..)))))((((((((((.(....).)))))))))).....)).))... ( -35.10) >DroSec_CAF1 83852 90 + 1 GCGCUCCCAGGCGGGGAAAAAAGGGACGGGUGAUGGGG-GGCA--GGGGCUCCUCUUUGCAGGGGUGGCGCUGCAAGGGGGCAGUGCUGCAAA ((((((((.(.(.(............).).)....)))-))).--((.((((((((((((((.(....).))))))))))).))).))))... ( -38.60) >DroSim_CAF1 47450 90 + 1 GCGCUCCCAGGCGGGGAAAAAAGGGACGAAUGGUGGGG-GGCA--GGGGCUCCUCUUUGCAGGGGUGGCGCUGCAAGGGGGCAGUGCUGCAAA ((((((((..((.(................).)).)))-))).--((.((((((((((((((.(....).))))))))))).))).))))... ( -38.09) >consensus GCGCUCCCAGGCGGGGAAAAAAGGGACGGAUGGUGGGG_GGCA__GGGGCUCCUCUUUGCAGGGGUGGCGCUGCAAGGGGGCAGUGCUGCAAA (((((((((..((.............)).....))))..)))...((.((((((((((((((.(....).))))))))))).))).))))... (-30.77 = -30.89 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:03 2006