| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,634,655 – 8,634,756 |
| Length | 101 |
| Max. P | 0.815398 |
| Location | 8,634,655 – 8,634,756 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 69.59 |
| Mean single sequence MFE | -21.37 |
| Consensus MFE | -11.14 |
| Energy contribution | -12.57 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8634655 101 - 22224390 AGAUCGUUAAGUACGUAAAUACUUAAUACGCUAUUGAAAAGGGCUAAUGAGCUUGGACCAAUGGAAA--CACA-----CAAGCUGAUG-GAAAGUGGUCAAAGUGGGAA ...((((((((((......)))))))).((((.((((.........((.((((((......((....--))..-----)))))).)).-........)))))))).)). ( -23.47) >DroSec_CAF1 72113 83 - 1 AGAUCAUUAAGUACGUAAGUACUUAAUACGCUAGUGAAAA----------------GCCAAUGGAAA--CUCA-----GA--GUGAUG-GGAAGUGGUCAAAGAGGGAA .(((((((((((((....))))))))).((((..(((...----------------.((...))...--.)))-----.)--)))...-......)))).......... ( -20.90) >DroSim_CAF1 35733 99 - 1 AGAUCGUUUAGUACGUAGAUACAUAAUACGCUAGUGAAAAGGGUUAAUGAGCUUGGGCCAAUGGAAA--CACA-----GA--GUGAUG-GAAAGUGGUCAAAGGGGGAA .((((.((((.((((((.........)))).)).))))...))))......(((.(((((.((....--))((-----..--....))-.....))))).)))...... ( -16.80) >DroEre_CAF1 84298 108 - 1 AGAUCCUGACUCUUUAAAGUCAUUUAGACG-UAUUGAAAAGGGCUCAUGAGCUUGGGAAAAUAAGGAAGGACAGCAUGCAAGCUGGUGGGAAAGUGGUCAAAGUGGGAA ...((((((((......)))))......((-..((((......(((((.((((((.......................)))))).))))).......))))..))))). ( -24.32) >consensus AGAUCGUUAAGUACGUAAAUACUUAAUACGCUAGUGAAAAGGGCUAAUGAGCUUGGGCCAAUGGAAA__CACA_____CA__CUGAUG_GAAAGUGGUCAAAGUGGGAA .(((((((((((((....)))))))))...((((((....(((((....)))))....))))))...............................)))).......... (-11.14 = -12.57 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:59 2006