Locus 3250

Sequence ID X_DroMel_CAF1
Location 8,606,890 – 8,606,985
Length 95
Max. P 0.707982
window5333

overview

Window 3

Location 8,606,890 – 8,606,985
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 92.69
Mean single sequence MFE -22.10
Consensus MFE -17.56
Energy contribution -18.64
Covariance contribution 1.08
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.79
SVM decision value 0.37
SVM RNA-class probability 0.707982
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8606890 95 - 22224390
AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAA-UGCUUUUCACGCCCAUUUGCUGUGCGCCAACAAAAUUGUUGCGCUGA
...(((..(((((((((((....))))))).........((((((((.-...))))).))).....))))..((((.((((....))))))))))) ( -24.50)
>DroSec_CAF1 44975 96 - 1
AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAAGAGCUUUUCACGCCCAUUUGCUGUGCGCCAACAAAAUUGUUGCGCUGA
...(((..(((((((((((....))))))).........((((((((.....))))).))).....))))..((((.((((....))))))))))) ( -24.50)
>DroSim_CAF1 15754 96 - 1
AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAAGAGCUUUUCACGCCCAUUUGCUGUGCGCCAACAAAAUUGUUGCGCUGA
...(((..(((((((((((....))))))).........((((((((.....))))).))).....))))..((((.((((....))))))))))) ( -24.50)
>DroEre_CAF1 55824 92 - 1
---UCAAAGGCAGAAGAAAAUAUUUUCCCCAAAUUUAUUGCGCAAAAA-UGCUUUUCACGCCCAUUUGCGGUGAGCUAACAAAAUUGUUGCGUUGA
---.....((..(((((.....))))).)).........((((.....-.((((....(((......)))..)))).((((....))))))))... ( -15.70)
>DroYak_CAF1 45270 95 - 1
AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAG-CGCUUUUCACGCCCAUUUGCUGUGAGCUAACAAAAUUGCUGCGCUGA
...(((..(((((((((((....))))))).........((((((((.-...))))).))).....))))((((((..........))).)))))) ( -21.30)
>consensus
AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAA_AGCUUUUCACGCCCAUUUGCUGUGCGCCAACAAAAUUGUUGCGCUGA
...(((..(((((((((((....))))))).........((((((((.....))))).))).....))))..((((.((((....))))))))))) (-17.56 = -18.64 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:52 2006