Locus 325

Sequence ID X_DroMel_CAF1
Location 1,024,812 – 1,024,918
Length 106
Max. P 0.933658
window497

overview

Window 7

Location 1,024,812 – 1,024,918
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.95
Mean single sequence MFE -36.10
Consensus MFE -13.89
Energy contribution -17.34
Covariance contribution 3.45
Combinations/Pair 1.14
Mean z-score -2.24
Structure conservation index 0.38
SVM decision value 1.23
SVM RNA-class probability 0.933658
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1024812 106 + 22224390
GCACUAAUUUAUCAGGUUUGUGGUC-------CAGUACUCAGGCCUCAAUCUUUUGUUCGAAGGCAAGGAG-----CUUGGGGCUUUAGGUCGAGUUCUGGAUACCGGACAAG-GGACA-
...............((((.(.(((-------(.(((..(((..(((.((((...((((..((((.....)-----))).))))...)))).)))..)))..))).)))).).-)))).- ( -34.60)
>DroSec_CAF1 10341 111 + 1
GCACUAAUUUAUCAGGUUUGUGGUC-------CAGAACUCAGGCCUCAAUCUUUUGUUCAAAGGCAAGGAGUCGCACUUGGGGCUUUAGGUCGAGUUCUGGAUAACGGACAAG-GGACA-
...........((..((((((.(((-------((((((((.(((((.......((((......))))((((((.(....).)))))))))))))))))))))).))))))...-))...- ( -39.90)
>DroSim_CAF1 9908 111 + 1
GCACUAAUUUAUCAGGUUUGUGGUC-------CAGAACUCAGGCCUCAAUCUUUUGUUCAAAGGCAAGGAGUCGCACUUGGGGCUUUAGGUCGAGUUCUGGAUACCGGACAAG-GGACA-
...........((..(((((..(((-------((((((((.(((((.......((((......))))((((((.(....).))))))))))))))))))))))..)))))...-))...- ( -38.50)
>DroYak_CAF1 10692 118 + 1
GCACUAAUUUAUCAGGUUUGUGGUCCCGAAUCCAGAACUCAGGCCUCAAUCUUUUGUUCGAAGGAAAGGAGUCGCAUUUGGGGCUUCAGGUCGAGUUCUGGUUACCGGACAAU-GGACA-
...............(((..(.((((.(...(((((((((.(((((...((((((....))))))..((((((.(....).))))))))))))))))))))...).)))).).-.))).- ( -45.80)
>DroAna_CAF1 15254 86 + 1
GCACGAAUUUAUCUGUUUUGUG--------------ACUCAUGUUCAUGUCUUUUGUUCGAU--------------UUUGGG------GGUAAACCUCUGCAUAACGGACAGUCAGACAG
.((((((.........))))))--------------...........(((((.(((((((..--------------...(((------((....)))))......)))))))..))))). ( -21.70)
>consensus
GCACUAAUUUAUCAGGUUUGUGGUC_______CAGAACUCAGGCCUCAAUCUUUUGUUCGAAGGCAAGGAGUCGCACUUGGGGCUUUAGGUCGAGUUCUGGAUACCGGACAAG_GGACA_
.(((.((((.....)))).)))(((.......((((((((.(((((....(((((....)))))...((((((.(....).))))))))))))))))))).......))).......... (-13.89 = -17.34 +   3.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:49 2006