Locus 3249

Sequence ID X_DroMel_CAF1
Location 8,604,444 – 8,604,537
Length 93
Max. P 0.515706
window5332

overview

Window 2

Location 8,604,444 – 8,604,537
Length 93
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 76.61
Mean single sequence MFE -27.08
Consensus MFE -14.62
Energy contribution -16.32
Covariance contribution 1.69
Combinations/Pair 1.05
Mean z-score -1.61
Structure conservation index 0.54
SVM decision value -0.04
SVM RNA-class probability 0.515706
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8604444 93 + 22224390
GGUGGCUG--GCUGUGGCCUUU---UUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCACACCAC----UCGACCACA
((((...(--(.((.(((...(---(((((...((((...(((((......))))).))))))))))...)))-.))..))...))))..----......... ( -31.10)
>DroSec_CAF1 42622 82 + 1
GGUGGC-------------UUU---UUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCACACCAC----UCCACCACA
((.(((-------------(.(---(((((...((((...(((((......))))).))))))))))..))))-))..............----......... ( -26.70)
>DroEre_CAF1 53475 84 + 1
GGUGGCUGUGGCU--------U---UUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCACUCCAC----UC---CACU
(((((.((.((((--------(---(((((...((((...(((((......))))).))))))))))..))))-.))....)))))....----..---.... ( -28.00)
>DroYak_CAF1 42622 91 + 1
GGUGGCUGCGGCUGUGGC-UCU---UGCGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCACUCCAC----UA---CACA
(((((.((((((.(((((-((.---........)).))))).))))))..((((.((....)).......)))-)...........))))----).---.... ( -31.80)
>DroAna_CAF1 36270 83 + 1
--------------UGGC-AUU---UUUGCAUUGAUGCUACCGCCACACCGGGCGGCCGUCGCAAAAUUAGCC-CCAUUCCCCAUCCCCCCAUCUCCA-CAGA
--------------.(((-..(---(((((...((((...(((((......))))).))))))))))...)))-........................-.... ( -21.10)
>DroPer_CAF1 56062 94 + 1
UUUGGCUUUGGCUUUGCC-UUUGCGUUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUUGCAAAAUUAGCCCCCAUUCCCCAUUCCACCAGCA--------
..(((....((((....(-..(((....)))..).(((.((.(((((.....))))).)).))).....)))).)))..................-------- ( -23.80)
>consensus
GGUGGCUG__GCU_UGGC_UUU___UUUGCAUUGAUGCUACCGCCGCACCGGGCGGCCGUCGCAAAAUUAGCC_CCAUUCCCCACUCCAC____UC___CACA
((.((((..................(((((...((((...(((((......))))).)))))))))...)))).))........................... (-14.62 = -16.32 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:51 2006