| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,594,851 – 8,594,946 |
| Length | 95 |
| Max. P | 0.991264 |
| Location | 8,594,851 – 8,594,946 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 87.77 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -30.31 |
| Energy contribution | -30.50 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.991264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8594851 95 - 22224390 ----------UUUCGAGGGGGCUUACGUGGCUCUUACGGUGGCUUUGGAGUCUCAAGAAGUGGGAGCCGCAGAUGUCAGCGCUUGGAAAUGUGUUAAUAUUUGAU ----------...((..((((((.....))))))..))((((((((.(..((....))..).))))))))((((((.(((((........))))).))))))... ( -32.30) >DroSec_CAF1 35057 105 - 1 UUUUUUUUUGUUUUGAGGGGGCUUACGUGGCUCUUACGGGGGCUUUGGGGUCUCAAGAAGUGGGAGCCGCAGAUGUCAGCGCUUGGAAAUGUGUUAAUAUUUGAU .............((((....)))).(((((((((((.((((((....)))))).....)))))))))))((((((.(((((........))))).))))))... ( -33.80) >DroEre_CAF1 45878 96 - 1 UU--------UUUUG-AGGGGCUUACGUGGCUCUUAAGGGGGCUUUGGGGCCUCGAGAAGUGGGAGCCGCUGAUGUCAGCGCUUGGAAAUGUGUUAAUAUUUGAU ..--------((((.-(((.(((.((((((((((((..((((((....))))))......))))))))))....)).))).))).))))................ ( -32.80) >DroYak_CAF1 35440 94 - 1 GG----------GAG-GGGGGCUUACGUGGCUCUUAAGGGGGCUUUGGGGUCUCAAGAAGUGGGAGCCGCAGAUGUCAGCGCUUGGAAAUGUGUUAAUAUUUGAU (.----------.((-.....))..)((((((((((..((((((....))))))......))))))))))((((((.(((((........))))).))))))... ( -30.70) >consensus UU________UUUUG_GGGGGCUUACGUGGCUCUUAAGGGGGCUUUGGGGUCUCAAGAAGUGGGAGCCGCAGAUGUCAGCGCUUGGAAAUGUGUUAAUAUUUGAU ................(((.(((.(((((((((((((.((((((....)))))).....)))))))))))....)).))).)))..((((((....))))))... (-30.31 = -30.50 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:50 2006