| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,586,369 – 8,586,467 |
| Length | 98 |
| Max. P | 0.548100 |
| Location | 8,586,369 – 8,586,467 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.62 |
| Mean single sequence MFE | -24.48 |
| Consensus MFE | -10.75 |
| Energy contribution | -11.92 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8586369 98 - 22224390 U-------UUCCAGCGUCACCGGGGGAAACUCCCCGUCGGAAUAAAACAAAAACAGCGAAAUGCAAAUAUUUAAAUUGCAUUCGCGACUGUCGC---CCACGCCUCGU .-------.....(((.(((((((((.....))))..)))...............(((((.(((((.........))))))))))...)).)))---........... ( -26.70) >DroSec_CAF1 27285 96 - 1 U-------UUCCAGCGUCACCGGGGGAAACUC--CGUCGGAAUAAAACAAAAACAGCGAAAUGCAAAUAUUUAAAUUGCAUUCGCGACUGUCGC---CCACGCCUCGU .-------.....(((.((..((((....)))--)((((........).......(((((.(((((.........))))))))))))))).)))---........... ( -26.80) >DroEre_CAF1 37037 84 - 1 U-------UUCCAGCGUCACAGGCGGAAACGC--CAUCGGAAUAAAACAAAAACAGCGAAAUGCAAAUAUUUAAAUUGCAUUCGCGACUGUCG--------------- .-------.......(((...((((....)))--)....................(((((.(((((.........))))))))))))).....--------------- ( -25.00) >DroYak_CAF1 27156 96 - 1 U-------UUCCAGCGUCACAGGGGAAAACUC--CGUUGGAAUAAAACAAAAACAGCGAAAUGCAAAUAUUUAAAUUGCAUUCGCGACUGUCGC---CCACGCCUCGU .-------((((((((.....(((.....)))--)))))))).............(((.(((((((.........))))))).(((.....)))---...)))..... ( -22.40) >DroAna_CAF1 18912 97 - 1 UCCCUCGAUUCCAGCGACGCAG---GAAACUC--CCGCGGAAUAAAACAAAAAUGGCGAAAUGCAAAUAUUUAAAUUGCAUUCGCGACAGCCGC---C---GCCCAGU .......(((((.(((..(.((---....)))--.))))))))...........((((.(((((((.........))))))).(((.....)))---)---))).... ( -24.80) >DroPer_CAF1 36950 91 - 1 U--------UCCACCGACCGUCCGGAAAGC---------GGAGGAAACAAAAACAACGAAAUGCAAAUAUUUAAAUUGCAUUCGCGACAGUCGUGUGCCACACUCUGU (--------(((.(((.((....))....)---------)).))))..........((((.(((((.........)))))))))..((((..(((.....))).)))) ( -21.20) >consensus U_______UUCCAGCGUCACAGGGGGAAACUC__CGUCGGAAUAAAACAAAAACAGCGAAAUGCAAAUAUUUAAAUUGCAUUCGCGACUGUCGC___CCACGCCUCGU ...............(((....(((....))).......................(((((.(((((.........))))))))))))).................... (-10.75 = -11.92 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:45 2006