| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,582,334 – 8,582,427 |
| Length | 93 |
| Max. P | 0.727397 |
| Location | 8,582,334 – 8,582,427 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.29 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -22.83 |
| Energy contribution | -23.17 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.727397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8582334 93 - 22224390 GCGCAUUUGGCUUUUGUAACGUGAUUAUCAGACGAUUUGAUUUGGCGCUAAAUGCAAUUGCCAAAUGCCAAAGUCAACGGGCUGCGGGAUAAC------------------ (((((((((((..(((((..(((...((((((...))))))....)))....)))))..)))))))))...((((....))))))........------------------ ( -29.20) >DroVir_CAF1 19435 99 - 1 GCGCAUUUGGCUUUUAUAACGUGAUUAUCAGACGAUUUGAUUUGGCGCUAAAUGCAAUUGCCAAAUGCCAAAGUCAACGC-----AGGCAACCAAUAGAAACG-----G-- (.(((((((((..((.....((.(..((((((...)))))).).))((.....))))..))))))))))...(((.....-----.)))..............-----.-- ( -22.40) >DroGri_CAF1 20691 97 - 1 GCGCAUUUGGCUUUUAUAAAGUGAUUAUCAGACGAUUUGAUUUGGCGCUAAAUGCAAUUGCCAAAUGCCAAAGUCAACGA-----CGGAAACAA-UGGAGAUG-------- (.(((((((((..((.....((.(..((((((...)))))).).))((.....))))..))))))))))...(((..((.-----.(....)..-))..))).-------- ( -23.70) >DroSec_CAF1 23275 93 - 1 GCGCAUUUGGCUUUUGUAACGUGAUUAUCAGACGAUUUGAUUUGGCGCUAAAUGCAAUUGCCAAAUGCCAAAGUCAACCGGCAGCGGGAUAAC------------------ (((((((((((..(((((..(((...((((((...))))))....)))....)))))..)))))))))....(((....))).))........------------------ ( -28.80) >DroEre_CAF1 33196 96 - 1 GCGCAUUUGGCUUUUGUAACGUGAUUAUCAGACGAUUUGAUUUGGCGCUAAAUGCAAUUGCCAAAUGCCAAAGUCAACGGGCAGCGGG---------------CAGCGGGC (((((((((((..(((((..(((...((((((...))))))....)))....)))))..)))))))))....(((..(.....)..))---------------).)).... ( -30.20) >DroYak_CAF1 17369 111 - 1 GCGCAUUUGGCUUUUGUAACGUGAUUAUCAGACGAUUUGAUUUGGCGCUAAAUGCAAUUGCCAAAUGCCAAAGUCAACGGGCAGCGGGAAAACACCAGGAACACAAGGAAC (((((((((((..(((((..(((...((((((...))))))....)))....)))))..)))))))))....(((....))).))((.......))............... ( -30.50) >consensus GCGCAUUUGGCUUUUGUAACGUGAUUAUCAGACGAUUUGAUUUGGCGCUAAAUGCAAUUGCCAAAUGCCAAAGUCAACGGGCAGCGGGAAAAC__________________ (.(((((((((..(((((..(((...((((((...))))))....)))....)))))..)))))))))).......................................... (-22.83 = -23.17 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:44 2006