| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,576,996 – 8,577,094 |
| Length | 98 |
| Max. P | 0.645787 |
| Location | 8,576,996 – 8,577,094 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 63.96 |
| Mean single sequence MFE | -25.52 |
| Consensus MFE | -5.35 |
| Energy contribution | -7.13 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.21 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8576996 98 + 22224390 CCAGUGCACCCAUGCGAACUGUAUU-UUGCUUAUAUCCGGCUGGUAUUUUUGCUG-UGCUCUGCUUUGCUGAGAAAUGGAAAUAUUUCUCGGCAGCUCCA .(((.((((....(((((..(((((-..(((.......))).))))).))))).)-))).)))..(((((((((((((....)))))))))))))..... ( -32.70) >DroSec_CAF1 11112 98 + 1 UCAGUGCACCAAUGCGAACUGUAUU-UUGCUUAUAUCCGGCUGGUAUUUUUGCUG-UGCUCUGCUUUGCUGAGAAAUGGAAAUAUUUCUCGGCAGCUCGA .(((.((((....(((((..(((((-..(((.......))).))))).))))).)-))).)))..(((((((((((((....)))))))))))))..... ( -32.50) >DroEre_CAF1 27844 82 + 1 -CAGUGCAGCCUUGCGAACUGUAUU-UUGCUUAUAUCCGGCUGGUAUUUU----------------UGCUGAGAAAUGGAAAUAUUUCUCGGCAGCUCCA -.(((((((((..(((((......)-))))........)))).))))).(----------------((((((((((((....)))))))))))))..... ( -25.40) >DroWil_CAF1 18855 86 + 1 UGUUUUGACCCCAGAGAACUAUAUUUUUGUUUAUAUCCGGCCGGCAUUUUUGUG----C----CUAAACUGUCAA-AGCAGCUA-----CUGCUGCUCCA ...((((((.((.((((((.........))))...)).))..(((((....)))----)----)......)))))-)(((((..-----..))))).... ( -22.70) >DroYak_CAF1 12170 78 + 1 GCAGUGCACCCUUGCCAACUGU------------AUCCGUCUGCUAUUUUU----------UGCAGUGCUGAGAAAUGGAAAUAUUCCUCGGCAGCUCCA ((((((((....)))..)))))------------......((((.......----------.))))(((((((.((((....)))).)))))))...... ( -21.80) >DroPer_CAF1 25269 88 + 1 CCGUUGGGCC---CCGAACUAUAUU-UUGUUUAUAUCCGUACGGGAUUUUAGCUUUUUCUCUGUUUUACUGCCGUACAGCCAUA------AGAAGCUC-- ((((((((..---..((((......-..))))...)))).))))......((((((((....(((.(((....))).)))...)------))))))).-- ( -18.00) >consensus CCAGUGCACCCAUGCGAACUGUAUU_UUGCUUAUAUCCGGCUGGUAUUUUUGCU____C__UGCUUUGCUGAGAAAUGGAAAUAUUUCUCGGCAGCUCCA (((((((......))....((((........))))....)))))......................(((((((.((((....)))).)))))))...... ( -5.35 = -7.13 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:43 2006