| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,567,843 – 8,567,934 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 8,567,843 – 8,567,934 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 83.85 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -16.69 |
| Energy contribution | -15.38 |
| Covariance contribution | -1.31 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8567843 91 - 22224390 GCGAAUUUGCUUUGUCCAUUGUCA-GGGGCAACUAAUAUUCAGGGAAACCUUGACCUGCCCGCCCCCAGAUGGGUAAACAAAAAUAGAAAC-G .....((((.(((..(((((....-(((((.........(((((....)).))).......)))))..)))))..))))))).........-. ( -26.59) >DroSec_CAF1 1994 90 - 1 GGGAAUUUGCCAUGUCCAUUGUCG-GAGGCAACUAAUAUUCGGGGAAACCUUGACCUGCCCGCCCCCAGAAAGGCAAACAA-AAUAGAAAA-G (((...(((((...(((......)-))))))).......(((((....)).)))....)))(((........)))......-.........-. ( -22.50) >DroSim_CAF1 1957 91 - 1 GGGAAUUUGCCAUGUCCAUUGUCG-GAGGCAACUAAUAUUCAGGGAAACCUUGACCUGCCCGCCCCCAGAAAGGCAAACAA-AAUAGAAAAAA (((...(((((...(((......)-))))))).......(((((....)).)))....)))(((........)))......-........... ( -23.20) >DroEre_CAF1 18739 84 - 1 GGGAAUUUGUUUCGUC---UAUUGUAAGGCAACUAAUAUUCAAGGAAACCUUGACCUGCCCGCCCCCAGAAAGGCAAACAAAAAU-----G-G .....(((((((.(((---(.((....(((.........((((((...)))))).......)))....)).)))))))))))...-----.-. ( -17.69) >consensus GGGAAUUUGCCAUGUCCAUUGUCG_GAGGCAACUAAUAUUCAGGGAAACCUUGACCUGCCCGCCCCCAGAAAGGCAAACAA_AAUAGAAAA_G (((...(((((.((........))...))))).......((((((...))))))....)))(((........))).................. (-16.69 = -15.38 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:42 2006