Locus 3240

Sequence ID X_DroMel_CAF1
Location 8,567,289 – 8,567,407
Length 118
Max. P 0.547403
window5321

overview

Window 1

Location 8,567,289 – 8,567,407
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.07
Mean single sequence MFE -28.78
Consensus MFE -22.12
Energy contribution -22.40
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.77
SVM decision value 0.03
SVM RNA-class probability 0.547403
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8567289 118 - 22224390
UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAA-AAAGAAAAAAAAAAAAGAGAUACGGGGAGUGUUUGCCCGGUUG-UCUGUCGCCUGCGGU
.((((.....)))).....(((((((.......)))))))...(((.((((((...(...-...).............((((((.(((........))).).))-)))...))))))))) ( -28.50)
>DroSec_CAF1 1461 110 - 1
UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAA-AAAAA--------GAAAAGAUACGGGGAGUGUUUGCCCGGUUG-UCUGUCGCCUGCGGU
.((((.....)))).....(((((((.......)))))))...(((.((((((...(...-.....--------)...((((((.(((........))).).))-)))...))))))))) ( -28.20)
>DroSim_CAF1 1433 110 - 1
UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAA-AAAUA--------GAAAAGAUACGGGGAGUGUUUGCCCGGUUG-UCUGUCGCCUGCGGU
.((((.....)))).....(((((((.......)))))))...(((.((((((...(...-.....--------)...((((((.(((........))).).))-)))...))))))))) ( -28.20)
>DroEre_CAF1 18219 104 - 1
UCAUCAAAAUGGUGUCAUAUGUUUUUAAUAGCAGAAAACAAGGACCA-CAGGCAAACAA------A--------AAAAAGACACGGGAAAUGUUUUCCCGGUUA-UUUGCCGCCUGCGGU
.((((.....)))).....(((((((.......)))))))...(((.-(((((......------.--------..........(((((.....)))))(((..-...)))))))).))) ( -29.10)
>DroYak_CAF1 1407 112 - 1
UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAUGAAACA--------UAAAAGAUACGGGGAAUGUUUUCCCGCUUCCUCUGUCGCCUGCGGU
.((((.....)))).....(((((((.......)))))))...(((.((((((.....(((...))--------)....((((.((((((.((......))))))))))))))))))))) ( -29.90)
>consensus
UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAA_AAA_A________AAAAAGAUACGGGGAGUGUUUGCCCGGUUG_UCUGUCGCCUGCGGU
.((((.....)))).....(((((((.......)))))))...(((.((((((...............................(((.........)))(((......)))))))))))) (-22.12 = -22.40 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:41 2006