| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,560,924 – 8,561,024 |
| Length | 100 |
| Max. P | 0.713926 |
| Location | 8,560,924 – 8,561,024 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.87 |
| Mean single sequence MFE | -34.63 |
| Consensus MFE | -23.10 |
| Energy contribution | -23.27 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8560924 100 - 22224390 AGCA---------AAGUGUG----CUCACUUGGCUUUGGUGGUUUUGUGGUGCAGACUAGCGUGAGUUUUCACCACCUUCUUGCCAAUAUUUCCAGCUGUGUGCAGUGCCAGU .(((---------...((..----(.((.((((..((((..(....((((((.(((((......))))).))))))....)..)))).....)))).)).)..)).))).... ( -32.90) >DroVir_CAF1 6966 100 - 1 GGCA---------UUUGCCA----CUUACUUGGCCUUGGUUGUUUUGUGGUGCAGGCUGGCGUGCGUUUUGACCACUUUGCGACCGAUGUUGCCGGCAAUAUGCACGGCCAGA (((.---------...))).----.....((((((.(((((((...((((((((.(....).)))......)))))...)))))))((((((....))))))....)))))). ( -38.00) >DroGri_CAF1 3082 104 - 1 GGCA---------UUAGUUAAUUUCUUACUUGGCCUUGGUGGUUUUGUGGUGCAGGCUGGCGUGCGUUUUGACCACCUUGCGGCCCACGUUGCCCGCAAUGUGCACGGCCAGA (((.---------..(((.........)))..)))..(((((((....((((((.(....).))))))..)))))))....(((((((((((....)))))))...))))... ( -37.60) >DroSec_CAF1 3547 100 - 1 AGCA---------UCGUGCG----CUUACUUAGCUUUGGUGGUUUUGUGGUGCAGACUAGCGUGAGUUUUCACCACCUUCUUGCCAAUAUUUCCAGCUGUGUGCAGUGCCAGA ....---------..(.(((----(((((.(((((((((..(....((((((.(((((......))))).))))))....)..)))).......))))).))).))))))... ( -32.91) >DroSim_CAF1 3179 100 - 1 AGCA---------UCGUGUG----CUUACUUGGCUUUGGUGGUUUUGUGGUGCAGACUAGCGUGAGUUUUUACCACCUUCUUGCCAAUAUUUCCAGCUGUGUGCAGUGCCAGA ((((---------(...)))----))...(((((.((((..(....((((((.(((((......))))).))))))....)..))))........((((....))))))))). ( -30.60) >DroYak_CAF1 3161 109 - 1 AGCAGGAGCAAGAUCGUCUG----CUUACUUGGCUUUGGUGGUUUUGUGGUGCAGACUGGAGUGAGUUUUCACCACCUUCUUGCCAAUGUUUCCGGCUGUGUGCAGUGCCAGA (((((..(......)..)))----))...(((((.((((..(....((((((.(((((......))))).))))))....)..))))........((((....))))))))). ( -35.80) >consensus AGCA_________UCGUGUG____CUUACUUGGCUUUGGUGGUUUUGUGGUGCAGACUAGCGUGAGUUUUCACCACCUUCUUGCCAAUAUUUCCAGCUGUGUGCAGUGCCAGA .............................(((((.(((((((....((((((.(((((......))))).))))))....)))))))........((.....))...))))). (-23.10 = -23.27 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:40 2006