Locus 3236

Sequence ID X_DroMel_CAF1
Location 8,554,359 – 8,554,464
Length 105
Max. P 0.736722
window5315

overview

Window 5

Location 8,554,359 – 8,554,464
Length 105
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 89.09
Mean single sequence MFE -20.57
Consensus MFE -16.70
Energy contribution -16.95
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.81
SVM decision value 0.44
SVM RNA-class probability 0.736722
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8554359 105 - 22224390
GUAUGU-AUAUGCGGUGCAAGAACCGCAGCAA---CAACAAUAAUCGUGGGCUUGAAAACUGCCAGCGUGCAAAACACCAAAAAGAAUUUAACUAAAUCAACCUAA----UUC
((((((-...((((((......))))))....---..............(((.........))).))))))...................................----... ( -20.40)
>DroSec_CAF1 15100 108 - 1
GUAUGU-UUAUGCGGUGCAAGAACCGCAACAACAACAACAAUAAUCGGGGGCUUGAAAACUGCCAGCGUGCAAAACACCAAAAAGAAUUUAACUAAAUCAACCUAA----UUC
((.(((-(..((((((......))))))..))))))......(((..(((((.........))).(.(((.....))))......................))..)----)). ( -20.80)
>DroSim_CAF1 22313 108 - 1
GCAUGU-UUAUGCGGUGCAAGAACCGCAACAACAACAACAAUAAUCGGGGGCUUGAAAACUGCCAGCGUGCAAAACACCAAAAAGAAUUUAACUAAAUCAACCUAA----UUC
((((((-(..((((((......)))))).....................(((.........))))))))))...................................----... ( -22.40)
>DroEre_CAF1 15867 104 - 1
------UAUAUGCGGUGCAAGAACCGCAACAA---CAACAAACAUCGGGGGCUUGAAAACUGCCAGCGUGCAAAACACCACAAAGAAUUGAACUAAAUCAACCUAAUUAAUUA
------....((((((......))))))....---...........((((((.........)))...(((........)))......((((......)))))))......... ( -18.70)
>consensus
GUAUGU_AUAUGCGGUGCAAGAACCGCAACAA___CAACAAUAAUCGGGGGCUUGAAAACUGCCAGCGUGCAAAACACCAAAAAGAAUUUAACUAAAUCAACCUAA____UUC
..........((((((......))))))..................((((((.........))).(.(((.....))))......................)))......... (-16.70 = -16.95 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:35 2006