Locus 323

Sequence ID X_DroMel_CAF1
Location 1,023,103 – 1,023,195
Length 92
Max. P 0.531600
window493

overview

Window 3

Location 1,023,103 – 1,023,195
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 89.46
Mean single sequence MFE -27.46
Consensus MFE -21.28
Energy contribution -21.60
Covariance contribution 0.32
Combinations/Pair 1.14
Mean z-score -1.45
Structure conservation index 0.77
SVM decision value -0.00
SVM RNA-class probability 0.531600
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1023103 92 + 22224390
UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGAGGCGGAGGCGAGGCUUAGUUAGCCUGGGAGCAGCAGCCGCAGCAACA
..................((.((((((((......))))))))...((((..((.(((((.....)))))(....).))..)))).)).... ( -29.90)
>DroSec_CAF1 8622 92 + 1
UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGAGAGGCGGAGGCGAGGCUUAGUUAGCCUGGGAGCAGCAGCCGCAGCAACA
..................((..(((((((......)))))))....((((..((.(((((.....)))))(....).))..)))).)).... ( -25.90)
>DroSim_CAF1 8180 92 + 1
UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGAGGCGGAGGCGAGGCUUAGUUAGCCUGGGAGCAGCAGCCACAGCAACA
..................((.((((((((......))))))))..(((.(..((.(((((.....)))))....))..).)))...)).... ( -27.50)
>DroYak_CAF1 8898 92 + 1
UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGAGGCGGAGGCGAGGCUUAGUUGGCCUGGGAGCAGCAGCCGCAGCAACA
..................((.((((((((......))))))))...((((..((.(((((.....)))))(....).))..)))).)).... ( -29.90)
>DroAna_CAF1 13331 86 + 1
UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGGCAAGGAGGCAGGUCUUAGUUGGCCCUGU------UGGGUCUGCAACA
..................((.((((((((......)))))))).))...((((....)))).((.(((((...------.))))).)).... ( -24.10)
>consensus
UUUUAACCAAAACAUUAAGCAGCUGGUGUCACAUUAUAUCAGCGAGGCGGAGGCGAGGCUUAGUUAGCCUGGGAGCAGCAGCCGCAGCAACA
..................((.((((((((......))))))))(.(((....((.(((((.....)))))....))....))).).)).... (-21.28 = -21.60 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:45 2006