| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,547,865 – 8,547,984 |
| Length | 119 |
| Max. P | 0.936258 |
| Location | 8,547,865 – 8,547,984 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.99 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -21.76 |
| Energy contribution | -21.96 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8547865 119 + 22224390 A-UUUUCCUGCCAAAAGCCGAGAAAUCAUUCGCAUUCAUUUGACCAAAAUCAAUUUUGUAAAUUAUAAAGUAUUAUGGGAGUUUAUGUGAAUGAAUUUAUAAAUGGAUGCACAUUUAAGU .-(((((..((.....)).))))).......(((((((((((.(((.(((..((((((((...))))))))))).)))((((((((....)))))))).))))))))))).......... ( -24.80) >DroSec_CAF1 8812 119 + 1 A-UUUUCCUACCAAAAGCCGAGAAAUCAUUCGCAUUCAUUUGACCAAAAUCAAUUUUGUAAAUUAUAAAGUAUUAUGGGAGUUUAUGUGAAUGAAUUUAUAAAUGGAUGCACAUUUAAGU .-.................((....))....(((((((((((.(((.(((..((((((((...))))))))))).)))((((((((....)))))))).))))))))))).......... ( -24.30) >DroSim_CAF1 11685 119 + 1 A-UUUUCCUACCAAAAGCCGAGAAAUCAUUCGCAUUCAUUUGACCAAAAUCAAUUUUGUAAAUUAUAAAGUAUUAUGGGAGUUUAUGUGAAUGAAUUUAUAAAUGGAUGCACAUUUAAGU .-.................((....))....(((((((((((.(((.(((..((((((((...))))))))))).)))((((((((....)))))))).))))))))))).......... ( -24.30) >DroEre_CAF1 9409 120 + 1 ACUUUUCCCAUCAAAAGCCGAGAAAUCAUUCGCAUUCAUUUGACCAAAAUCAAUUUUGUAAAUUAUAAAGUAUUAUGGGAGUUUAUGUGAAUGAAUUUAUAAAUGGAUGCACAUUUAAGU .(((((......)))))..((....))....(((((((((((.(((.(((..((((((((...))))))))))).)))((((((((....)))))))).))))))))))).......... ( -24.70) >DroYak_CAF1 10482 119 + 1 A-UUUUCCCAUCAAAAGCCGAGAAAUCAUUCGCAUUCAUUUGACCAAAAUCAAUUUUGUAAAUUAUAAAGUAUUAUGGGAGUUUAUGUGAAUGCAUUUAUAAAUGGAUGCACAUUUAAGU .-.................((....))....((((((((.(..(((.(((..((((((((...))))))))))).)))..).....)))))))).....((((((......))))))... ( -21.30) >consensus A_UUUUCCUACCAAAAGCCGAGAAAUCAUUCGCAUUCAUUUGACCAAAAUCAAUUUUGUAAAUUAUAAAGUAUUAUGGGAGUUUAUGUGAAUGAAUUUAUAAAUGGAUGCACAUUUAAGU ...............................(((((((((((.(((.(((..((((((((...))))))))))).)))((((((((....)))))))).))))))))))).......... (-21.76 = -21.96 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:20 2006