Locus 3222

Sequence ID X_DroMel_CAF1
Location 8,537,528 – 8,537,648
Length 120
Max. P 0.945947
window5286

overview

Window 6

Location 8,537,528 – 8,537,648
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.50
Mean single sequence MFE -45.86
Consensus MFE -44.84
Energy contribution -45.24
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.98
SVM decision value 1.36
SVM RNA-class probability 0.945947
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8537528 120 + 22224390
CAAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAGUUCUGUAUAGGUCU
..........((((((((((((..(((.....)))..)))...))))....((((((.....)))))).)))))..((((.....))))((((((((((((....)))))))).)))).. ( -47.00)
>DroSec_CAF1 1757 120 + 1
CGAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAGUUCUGUAUAGGUCU
((((.((....))))))........(((((.....((((.....))))...((((((.....)))))).)))))..((((.....))))((((((((((((....)))))))).)))).. ( -47.30)
>DroSim_CAF1 1774 120 + 1
CGAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAGUUCUGUAUAGGUCU
((((.((....))))))........(((((.....((((.....))))...((((((.....)))))).)))))..((((.....))))((((((((((((....)))))))).)))).. ( -47.30)
>DroEre_CAF1 1834 120 + 1
CGAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAAUUCUGUAUAGGUCU
.(((((...((((((..((....(((((((.....((((.....))))...((((((.....)))))).)))))..((((.....))))........))..))..))))))...))))). ( -44.00)
>DroYak_CAF1 1825 120 + 1
CGAUCUCCUCGGAAUCGGAUCCAUCGGAGCCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGUCGGCGCCUUAUAGAGCUUUAAUUCUGUAUAGGUCU
.(((((...((((((..((((....((.(((..((((((.(((...((((.((((((.....)))))).))))))).))).)))..))).)).....))..))..))))))...))))). ( -43.70)
>consensus
CGAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAGUUCUGUAUAGGUCU
..........((((((((((((..(((.....)))..)))...))))....((((((.....)))))).)))))..((((.....))))((((((((((((....)))))))).)))).. (-44.84 = -45.24 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:09 2006