| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,535,291 – 8,535,388 |
| Length | 97 |
| Max. P | 0.580772 |
| Location | 8,535,291 – 8,535,388 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.71 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -10.32 |
| Energy contribution | -10.72 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8535291 97 + 22224390 GAUAUUUCAUGUACGGGAUGUAC----------------CUGGUCUUAUUUAUACCUAAAGGUAAUUUCGUACUGCGUGCUUUAACGCAACAUGAAAAAUA-------CUGCAACUAUUU ....(((((((((((..((.(((----------------(((((.........)))...)))))))..)))..(((((......)))))))))))))....-------............ ( -25.70) >DroSec_CAF1 1117 100 + 1 GAUAUUCCAUGUAC----UGUAC----------------CUGGACUUAUUUGUACCUAAGGGUAAUUUCGUACUGUGUACUUUAAUGCAACAUGGAAAAUACUAGAUACUACAACUAUUU ....((((((((..----..(((----------------((((((......)).))...))))).....((((...)))).........))))))))....................... ( -18.50) >DroSim_CAF1 1115 100 + 1 GAUAUUCCAUGUAC----UGUAC----------------CUGGACUUAUUUGUACCUAAGGGUAAUUUCGUACUGUGUACUUUAAUGCAACAUGGAAAAUACUAGAUACUACAACUAUUU ....((((((((..----..(((----------------((((((......)).))...))))).....((((...)))).........))))))))....................... ( -18.50) >DroEre_CAF1 1411 116 + 1 GGUAUUCCACGUAC----UGUUACAGUACCAGGUUGUGCGUGGGAUUAUUUAUACCUAAAGGUAUCUUCGUACAGUUUACUUUAAAACCAAAUGGAAAACAUAAAAUAAAAGAAAUCUUU .((.(((((.((((----((...)))))).(..(((((((.((((.......((((....)))))))))))))))..)..............))))).))........((((....)))) ( -24.51) >DroYak_CAF1 1390 111 + 1 GGUAUUCCAUAUAC----UGUACCUGU-----UUUGUGUCUAGAAUUAGUUGUACCUAAAGGAAACUUGGCAUUGCUUAGUGCAACACAAAAUGAAAAAUACAAAAUAGUACAACUAUUU (((((.....))))----)((((.(((-----(((((((.....(((.(((((((...(((....)))(((...)))..)))))))....))).....))))))))))))))........ ( -25.00) >consensus GAUAUUCCAUGUAC____UGUAC________________CUGGACUUAUUUGUACCUAAAGGUAAUUUCGUACUGUGUACUUUAACGCAACAUGGAAAAUACAAAAUACUACAACUAUUU .((.((((((((........................................((((....)))).........(((((......))))))))))))).)).................... (-10.32 = -10.72 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:08 2006