Locus 3218

Sequence ID X_DroMel_CAF1
Location 8,524,680 – 8,524,800
Length 120
Max. P 0.843515
window5280

overview

Window 0

Location 8,524,680 – 8,524,800
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.00
Mean single sequence MFE -47.02
Consensus MFE -40.65
Energy contribution -41.57
Covariance contribution 0.92
Combinations/Pair 1.13
Mean z-score -1.87
Structure conservation index 0.86
SVM decision value 0.76
SVM RNA-class probability 0.843515
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8524680 120 - 22224390
AAUCCUCGCGGGAAUCGCAGAAAUCUGAUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGGUAAGUGCAGUAGCGAAAGUGCUGCUGCAGGUGCUUGGCCACCCGCAUUCCACAGCC
.......(((((....(((((.(((((..((((.((.....)).))))))))).)))))(((((((..((((((((((....))))))))))..)))))))...)))))........... ( -50.80)
>DroSec_CAF1 66062 120 - 1
AAUUCUCGCGGGAAUCGCAGAAAUCUGGUUGCGAUGACAGCCGGUGCACAGGUAUUUUCCCAGGUAAGUGCAGUAGCGAAAGUGUUGCUGCAGGUGCUUGGCCACCCGCAUUCCACAGCC
.......(((((....(((.....(((((((......))))))))))............(((((((..((((((((((....))))))))))..)))))))...)))))........... ( -46.00)
>DroSim_CAF1 69150 120 - 1
AAUUCUCGCGGGAAUCGCAGAAAUCUGGUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGGUAAGUGCAGUAGCGAAAGUGUUGCUGCAGGUGCUUGGCCACCCGCAUUCCACAGCC
.......(((((.(((((((........)))))))....(((((.((((..((((((((....)))))))).(((((((.....)))))))..)))))))))..)))))........... ( -48.50)
>DroEre_CAF1 72434 120 - 1
GAUCCUGGCGGGAACCGCGGAAAUCUGAUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGGUAGGUGCAGUAGCGAAAAUGCUGCUGUAGGUGCUUGGCCACCCGCAUUCCACAGCC
......(((.((((..((((..(((((..((((.((.....)).)))))))))...((.(((((((..(((((((((......)))))))))..))))))).)).)))).))))...))) ( -47.50)
>DroYak_CAF1 74710 120 - 1
GAUCCUGGCGGGAAUCGCAGAAAUCUGGUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGAUAGGUGCAGUAGCGAAAGUGCUGCUGCAGGUGCUUGGCCACCCGCAUGCCACAGCC
.....((((((..(((((((........)))))))..).((.((((..(((((((((((((.....)).((((((.(....))))))).)))))))))))..)))).)).)))))..... ( -50.80)
>DroAna_CAF1 108092 120 - 1
AAUCUUAGCGGGAAUGGCCGAUAUUUGGUUCCGGUGGCAGCCGGUGCAGAGAUAUUUUCCCAGAUAGUUGCAAUAGCGAUAGUGCUGCUGCAGAUGCUUUGCCACACGCAUGCCGCAGCC
......((((((((.....(((((((.((.(((((....))))).))..)))))))))))).....(((((....)))))...)))(((((.(((((..........)))).).))))). ( -38.50)
>consensus
AAUCCUCGCGGGAAUCGCAGAAAUCUGGUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGGUAAGUGCAGUAGCGAAAGUGCUGCUGCAGGUGCUUGGCCACCCGCAUUCCACAGCC
.......(((((....(((((.(((((..((((.((.....)).))))))))).)))))(((((((..((((((((((....))))))))))..)))))))...)))))........... (-40.65 = -41.57 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:03 2006