Locus 3217

Sequence ID X_DroMel_CAF1
Location 8,522,017 – 8,522,111
Length 94
Max. P 0.605575
window5279

overview

Window 9

Location 8,522,017 – 8,522,111
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 68.01
Mean single sequence MFE -30.75
Consensus MFE -5.96
Energy contribution -6.29
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.30
Structure conservation index 0.19
SVM decision value 0.15
SVM RNA-class probability 0.605575
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8522017 94 + 22224390
UUUUGGAAAAUUCCACACUGCGCAGCUCCAUG--ACGCUCUCGACCAAUCAGAAGUGUGGAUUCCAA---ACGCAAAACUACGCCCACACACAUAACGG
.(((((((...(((((((((((((......))--.)))(((.((....)))))))))))))))))))---).((........))............... ( -23.70)
>DroVir_CAF1 49097 87 + 1
UUUGUGGAGUGUGUGCGCA--UCAGCGAGCCGCAGCGC---CAGCCAAUGGCAGCUGUGGAUGCUAU---UGGCA----UACGCCCACACAGCGAAAGG
..(((((.((((((((.((--..((((..(((((((((---((.....)))).))))))).))))..---)))))----))))))))))...(....). ( -46.60)
>DroSim_CAF1 66479 94 + 1
UUUUGGAAAUUUCCACACUGCGCAGCUCCAUG--GCGCUCUGGACCAAUCAGAAGUGUGGAUCCCAA---ACGCAAGACUACGCCCACACACAUAACGG
.(((((.....((((((((((((.........--))))(((((.....)))))))))))))..))))---)(....)...................... ( -25.30)
>DroEre_CAF1 69686 94 + 1
UUUUGGAAAUUUCUACACUGCGCAGCUCCAUG--GCGAUUUGCACGAAUCAGAAGUGUGGAUCGUAA---AAGGAAGACAACGCCCACACACAUAACAG
...((((....))))....(((..(((((...--((((((..(((.........)))..))))))..---..)).)).)..)))............... ( -20.90)
>DroYak_CAF1 71999 94 + 1
UUUUGAAAAUUUCCACACUGCGCAGCUCCAUG--GCGAUUUGCACCAAUCAGUGGUGUGGAUCGUAA---AGGGAAGACAACGCCCACACACUUAACGG
...................(((..(((((...--((((((..(((((.....)))))..))))))..---..)).)).)..)))............... ( -25.90)
>DroAna_CAF1 102203 92 + 1
UUUUGGAGA---CGCCGCUGCGCAGG-CCACC--ACAGUUU-AGCCAAUGGCAGCUGUGGACGCUAUCUUGUGGAUGGCAACGCCCACACAGCGUGCGG
.........---((((((((.(..((-(..((--((((((.-.(((...)))))))))))..((((((.....))))))...)))..).))))).))). ( -42.10)
>consensus
UUUUGGAAAUUUCCACACUGCGCAGCUCCAUG__GCGCUUUGAACCAAUCAGAAGUGUGGAUCCUAA___ACGCAAGACAACGCCCACACACAUAACGG
......................................................((((((........................))))))......... ( -5.96 =  -6.29 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:02 2006