Locus 3215

Sequence ID X_DroMel_CAF1
Location 8,518,509 – 8,518,611
Length 102
Max. P 0.569241
window5274

overview

Window 4

Location 8,518,509 – 8,518,611
Length 102
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 73.98
Mean single sequence MFE -25.08
Consensus MFE -16.29
Energy contribution -16.77
Covariance contribution 0.48
Combinations/Pair 1.21
Mean z-score -1.11
Structure conservation index 0.65
SVM decision value 0.07
SVM RNA-class probability 0.569241
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8518509 102 + 22224390
G-AA-----AAAAGGACUCGCAGAUGGCAAUUGAUUG-GCUUAGUGAUGCUCGAUCGAGAUGCCAUAAAUA----------UCACGCGGACAGGAAGUUGGCAAUAGCAUAGAAGGCAA
.-..-----..........((..((((((.(((((((-((........)).)))))))..)))))).....----------....((.(((.....))).))....))........... ( -26.80)
>DroSec_CAF1 59599 98 + 1
GGAA-----AAAAGGACUCGCAGAUGGCAAUUGAUUG-GCUUAGUGAUGCUCGAUCGAGAUGCCAUAAAUA----------UCACGCGGACCGGAAGUUGGCAAUAUCAUAGAA-----
.((.-----..............((((((.(((((((-((........)).)))))))..)))))).....----------....((.((.(....))).))....))......----- ( -24.10)
>DroSim_CAF1 63132 98 + 1
GGAA-----AAAAGGACUCGCAGAUGGCAAUUGAUUG-GCUUAGUGAUGCUCGAUCGAGAUGCCAUAAAUA----------UCACGCGGACCGGAAGUUGGCAAUAUCAUAGAA-----
.((.-----..............((((((.(((((((-((........)).)))))))..)))))).....----------....((.((.(....))).))....))......----- ( -24.10)
>DroEre_CAF1 66267 105 + 1
GGAA------AAAGGACUCGCAGAUGGCCAUUGAUUG-GCUUAGUGAUGCUCGAUCGAAAUCCCAUAAAUAUCAUGAAAUAUCAUGCGGACAGGAAGUUGGCAAGGGGAA-------UA
....------...(..(((((....(((((.....))-)))..)))).)..)........((((.........((((....))))((.(((.....))).))...)))).-------.. ( -24.40)
>DroYak_CAF1 68488 104 + 1
GGAA----AAAAAGGACUCGCAGAUGGCAAUUGAUUG-GCUUAGUGAUGCUCGAUCGAGAAGCCAUAAAUA----------UCCUGCGGACAGGAAGUUGGCAAUAGGAAUCAAGGCUA
....----...........((..(((((..(((((((-((........)).)))))))...))))).....----------((((((.(((.....))).))...))))......)).. ( -27.30)
>DroAna_CAF1 96644 109 + 1
GUAGGGGGGGAUAGAGUCUGCAGAUGGCGAAUGAUUUUUAUUCGUGAUGCCUGAUCAAAUGCCCAUAAAUA----------UUAUACGAGGGGGGCUUUUGAAAUAUUUUUAAUGCUUA
.((((.(.((((...)))).)..((.((((((((...)))))))).)).)))).(((((.((((.......----------...........)))).)))))................. ( -23.77)
>consensus
GGAA_____AAAAGGACUCGCAGAUGGCAAUUGAUUG_GCUUAGUGAUGCUCGAUCGAGAUGCCAUAAAUA__________UCACGCGGACAGGAAGUUGGCAAUAGCAUAGAA___UA
.......................(((((..(((((((.((........)).)))))))...)))))...................((.(((.....))).))................. (-16.29 = -16.77 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:58 2006