| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,511,996 – 8,512,089 |
| Length | 93 |
| Max. P | 0.984506 |
| Location | 8,511,996 – 8,512,089 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.75 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -5.00 |
| Energy contribution | -4.96 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.21 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8511996 93 + 22224390 A-AUCG----AUACC----AAAAUGUGAAGU--GUGCUGCUCACUUCAAGGUGUUGAAUU--------GUUGUGAUAGGAUAUUAAACAC--CAAUCUCAUUUCGUAC--ACCAAG .-....----.....----......((((((--(.......))))))).(((((((((..--------..((.(((.((..........)--).))).)).)))).))--)))... ( -21.20) >DroSec_CAF1 53189 94 + 1 A-AUCGUGAAAUACC----UAGAUGUGAAGU--GUG---CUCACUUCAAGGUGUUGAAUU--------GUUGUGAUAGGAUAUUAUACAA--AAAUGUCAUUUCGUAC--AGCAAG .-.......((((((----(.....((((((--(..---..))))))))))))))...((--------((((((....((((((......--.))))))......)))--))))). ( -25.50) >DroSim_CAF1 56394 93 + 1 AAAUCG----AUACC----UAAAUGCGAAGU--GUG---CUCACUUCAAGGUGUUGAAUU--------GUUGUGAUAGGAUAUUAUACAUCCAAUUCUCAUUUUGUAC--AGCAAG ...(((----(((((----(......(((((--(..---..)))))).))))))))).((--------((((((...((((.......))))((........)).)))--))))). ( -23.80) >DroEre_CAF1 59717 95 + 1 A-AUCG----AUACC----UAAAUGUGGAGU--GUG---CUCACUUCAAGGUGUUGAAUGUUGUGCUGGACAAUCCAG-AUAUUAUACAC--AACA--CAUUUUGUAA--ACUGAG .-.(((----(((((----(.....((((((--(..---..)))))))))))))))).(((((((((((.....))))-........)))--))))--..........--...... ( -29.10) >DroYak_CAF1 61313 95 + 1 A-AUCG----AUACCCACAUAAGUGUGGAGUGUGUG---CUCACUUCAAGGUGUUGAAUA--------GUUAAACCAGCAUAUAAUACAC--AAAU--CCUUUUCUAUUUACU-AG .-.(((----((((((((....)))(((((((....---..))))))).))))))))...--------......................--....--...............-.. ( -19.00) >consensus A_AUCG____AUACC____UAAAUGUGAAGU__GUG___CUCACUUCAAGGUGUUGAAUU________GUUGUGAUAGGAUAUUAUACAC__AAAU_UCAUUUUGUAC__ACCAAG ...(((....(((((..........((((((...........)))))).))))))))........................................................... ( -5.00 = -4.96 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:54 2006