Locus 3204

Sequence ID X_DroMel_CAF1
Location 8,482,122 – 8,482,223
Length 101
Max. P 0.747525
window5257

overview

Window 7

Location 8,482,122 – 8,482,223
Length 101
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 79.07
Mean single sequence MFE -16.54
Consensus MFE -9.76
Energy contribution -11.08
Covariance contribution 1.32
Combinations/Pair 1.11
Mean z-score -1.90
Structure conservation index 0.59
SVM decision value 0.47
SVM RNA-class probability 0.747525
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8482122 101 - 22224390
AGCCAGCAGCGGCAGAAACAUCCCAAUCCCAAU------CCCAAUCCCAGCCAGGCAAGCAGGCACCCCUAAUAAUAAUAACCCCUCUGCAGCUCCUGUGCACUAAA
.(((((.(((.(((((.................------..........((.......))(((....)))...............))))).))).))).))...... ( -20.20)
>DroSec_CAF1 24518 85 - 1
AGCCAGCAGCGGCAGAAACAUCCCA------------------AUCCCAGCCAGC----CAGGCACCCCUAAUAAUAAUAACCCCUCUGCAGCUCCUGUGCACUAAA
.(((((.(((.(((((.........------------------......(((...----..)))........((....)).....))))).))).))).))...... ( -19.90)
>DroSim_CAF1 33712 91 - 1
AGCCAGCAGCGGCAGAAACAUCCCAAUCCCA------------AUCCCAGCCAGC----CAGGCACCCCUAAUAAUAAUAACCCCUCUGCAGCUCCUGUGCACUAAA
.(((((.(((.(((((...............------------......(((...----..)))........((....)).....))))).))).))).))...... ( -19.90)
>DroEre_CAF1 30616 100 - 1
AACCAGUAGCAGCAGCACCACCACCACCAGAAA---CAUCCCAAUCCCAGCCAGG----CACAAUCCCCUAAUAAUAAUAACCGCUCUGCAGAUCCUGUGCACCAAA
........((((.(((.............((..---..))............(((----........))).............)))))))................. ( -10.10)
>DroYak_CAF1 31414 103 - 1
AACCAGCAGCAGCAGAAACAUCCCAAUCCCAAUUCCAAUUCCAAUCCUAGUCAGG----CAGGCACCCCUAAUAUUAGUAACCCCUCUGCCGAUCCUGUGCACUAAA
.....(((.(((..((....))...........................(((.((----((((.....(((....))).......))))))))).))))))...... ( -12.60)
>consensus
AGCCAGCAGCGGCAGAAACAUCCCAAUCCCAA________CCAAUCCCAGCCAGG____CAGGCACCCCUAAUAAUAAUAACCCCUCUGCAGCUCCUGUGCACUAAA
.(((((.(((.(((((.................................(((.........))).......((....))......))))).))).))).))...... ( -9.76 = -11.08 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:43 2006