Locus 3203

Sequence ID X_DroMel_CAF1
Location 8,481,851 – 8,481,949
Length 98
Max. P 0.607732
window5256

overview

Window 6

Location 8,481,851 – 8,481,949
Length 98
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 73.39
Mean single sequence MFE -15.75
Consensus MFE -6.62
Energy contribution -6.63
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.42
SVM decision value 0.15
SVM RNA-class probability 0.607732
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8481851 98 - 22224390
UUAGAUUGCAAUCAUACUAUAUCUCUGAGAGAUCAUACUAUAUCUCUGAUAGAUCCUAUAUUUAUAAUGGAAUUUUUUCCAUGGUGU---AGCCUACCCCU
.(((..((((.((((.....((((.(.((((((........)))))).).))))..............((((....)))))))))))---)..)))..... ( -19.40)
>DroSec_CAF1 24263 83 - 1
UUAGAU------CA-----------UACUAUAUCAUACUAUAUCUCUGAUAGAUCCUAUAUUUAUAAUGGACU-UUUUCCAUGGUGUAGUAGCCUACCCCU
.(((..------..-----------(((((((((((.((((.......))))................(((..-...))))))))))))))..)))..... ( -15.10)
>DroSim_CAF1 33468 92 - 1
UUAGAU------CA--CUAUAUCACUACUAUAUCAUACCAUAUCUCUGAUAGAUCCUAUAUUCAUAAUGGACU-UUUUCCAUGGUGUAGUAGCCUACCCCU
......------..--........((((((((((((.....((((.....))))..............(((..-...)))))))))))))))......... ( -16.10)
>DroEre_CAF1 30354 75 - 1
UUU---------CA---UAUAGCAC--CUAUAG-------CAUCUCCGAUAGACUCUAGAUUUCUAAUGGACU-UUUUCCAUGGUGU---AGCCUACC-CU
...---------..---....((((--(..(((-------..(((.....)))..)))........(((((..-...))))))))))---........-.. ( -12.40)
>consensus
UUAGAU______CA___UAUAUCACUACUAUAUCAUACUAUAUCUCUGAUAGAUCCUAUAUUUAUAAUGGACU_UUUUCCAUGGUGU___AGCCUACCCCU
..................................................................(((((......)))))(((......)))....... ( -6.62 =  -6.63 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:42 2006