| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,478,289 – 8,478,389 |
| Length | 100 |
| Max. P | 0.593175 |
| Location | 8,478,289 – 8,478,389 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -37.37 |
| Consensus MFE | -23.20 |
| Energy contribution | -23.23 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8478289 100 - 22224390 -----GCAUCAUCAUCACAGCAUCUAUGGCU---------------CGGCCGCCGGCAGCAAUCCGCGCCUGCUGCAGCCGGGUGGCAAUAUCACACCGAUGGACAGCAGCAGCAGCAUC -----((....(((((..........(((((---------------((((.(((((.(....)))).))..)))).)))))((((.........)))))))))...((....)).))... ( -32.30) >DroVir_CAF1 385 100 - 1 -----GCAUCAUCAUCACAGCAUCUAUGGCA---------------CGGCAGCGGCCAGCAAUCCGCGGCUGCUGCAGCCGGGCGGCAAUAUAACGCCCAUGGAUAGCAGCAGCAGCAUU -----..............(((((((((((.---------------..(((((((((.((.....))))))))))).)))(((((.........))))))))))).)).((....))... ( -44.70) >DroPse_CAF1 26232 100 - 1 -----GCAUCACCAUCACAGCAUCUACGGAU---------------CGGCGGCGGGCAGCAAUCCCCGACUGCUGCAGCCGGGCGGCAACAUCACGCCGAUGGACAGCAGCAGCAGCAUC -----((....(((((..........(((..---------------((((((((((.(....).)))).))))))...)))((((.........)))))))))...((....)).))... ( -39.50) >DroGri_CAF1 1153 100 - 1 -----ACAUCAUCAUCACAGCAUCUAUGGAA---------------CGGCGGCGGGCAGCAAUCCGCGCCUGCUGCAGCCGGGCGGCAAUAUAACGCCAAUGGAUAGCAGCAGCAGCAUU -----..............((((((((((..---------------..(((((((((.((.....)))))))))))..)).((((.........)))).)))))).)).((....))... ( -37.80) >DroWil_CAF1 385 120 - 1 CAUCAUCAUCAUCAUCAGAGCAUUUAUGGUAGUGUGGCGGCAGCAGCAGCCGCCAGCAGUAAUCCCCGCCUGCUACAGCCUGGUGGCAAUAUCACACCCAUGGAUAGCAGCAGCAGCAUA ...................((((((((((..((((((((((.......)))))))..........(((((.((....))..)))))......)))..)))))))).)).((....))... ( -38.30) >DroAna_CAF1 39721 100 - 1 -----GCACCAUCAUCACAGCAUCUACGGAU---------------CGGCGGCCGGCAGCAACCCCCGGCUGCUGCAGCCCGGCGGCAACAUCACACCCAUGGACAGCAGCAGCAGCAUC -----((.((((.......(((((....)))---------------.(((((((((.........))))))))))).(((....)))............))))...((....)).))... ( -31.60) >consensus _____GCAUCAUCAUCACAGCAUCUAUGGAA_______________CGGCGGCCGGCAGCAAUCCCCGCCUGCUGCAGCCGGGCGGCAAUAUCACACCCAUGGACAGCAGCAGCAGCAUC ...................((..........................((..((.....))...))..(.(((((((..((.((((.........))))...))...)))))))).))... (-23.20 = -23.23 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:41 2006