Locus 32

Sequence ID X_DroMel_CAF1
Location 128,113 – 128,203
Length 90
Max. P 0.857529
window38

overview

Window 8

Location 128,113 – 128,203
Length 90
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.91
Mean single sequence MFE -31.69
Consensus MFE -21.28
Energy contribution -22.62
Covariance contribution 1.34
Combinations/Pair 1.32
Mean z-score -1.91
Structure conservation index 0.67
SVM decision value 0.81
SVM RNA-class probability 0.857529
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 128113 90 + 22224390
-------------UGGCCAUCCUCCGUUGUAAUAUAUAUUUGCCCAUCCUGUGUCUCGGUGAGAUCUACGGUCAUGUUCUCAUGACCAUUUACAUCAGUGAGA
-------------(((.((.....................)).))).......(((((.(((.......(((((((....))))))).......))).))))) ( -20.54)
>DroVir_CAF1 5703 103 + 1
UUUGCACUUACCUUGCCCAUCCUCGGUGGUGAUAAAGAUUUGACCAUCCUGCGCCUCGGUUAGAUCCACGGUCAUAUUCUCAUGGCCAUUCACAUCGGCAAGG
..........((((((((((.....)))((((....(((((((((............)))))))))...((((((......))))))..))))...))))))) ( -33.80)
>DroGri_CAF1 7391 101 + 1
--CGCAUUUACCUUGGCCAUCCUCGGUGGUGAUAAAGAUUUGACCAUCCUGCGCCUCGGUUAGAUCCACGGUCAUGUUCUCAUGACCAUUCACAUCGGUUAAG
--.........(((((((..(....)..((((....(((((((((............)))))))))...(((((((....)))))))..))))...))))))) ( -30.20)
>DroMoj_CAF1 6622 103 + 1
GUGGCACUUACCCUGCCCAUCCUCGGUGGUAAUAAAGAUUUGGCCAUCCUGCGCCUCGGUCAGAUCGACGGUCAUAUUGUCAUGACCAUUCACAUCGGCGAGA
(.((((.......)))))...((((.((((......(((((((((............)))))))))...((((((......))))))......)))).)))). ( -33.30)
>DroAna_CAF1 22196 101 + 1
--GAUGCUCACCCUGACCAUCCUCGGUGGUGAUGAAUAUUUGGCCAUCUUGCGUCUCGGUGAGGUCCACGGUCAUGUUCUCGUGGCCAUUGACGUCGGUGAGA
--....((((((..(((.....((((((((.((((..((.(((((((((..(......)..))))....))))).))..)))).)))))))).))))))))). ( -38.00)
>DroPer_CAF1 611 101 + 1
--ACUACUCACCCUGCCCAUCCUCGGUGGUGAUAUAGAUUUGGCCAUCUUGCGUCUCGGUCAGAUCCACGGUCAUGUUCUCAUGCCCGUUGACAUCGGUGAGA
--....((((((..(((.......)))((((.....(((((((((............))))))))).((((.((((....)))).))))...)))))))))). ( -34.30)
>consensus
__GGCACUUACCCUGCCCAUCCUCGGUGGUGAUAAAGAUUUGGCCAUCCUGCGCCUCGGUCAGAUCCACGGUCAUGUUCUCAUGACCAUUCACAUCGGUGAGA
.....................((((.(((((.....(((((((((............)))))))))...(((((((....))))))).....))))).)))). (-21.28 = -22.62 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:51 2006