| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,467,828 – 8,467,931 |
| Length | 103 |
| Max. P | 0.976067 |
| Location | 8,467,828 – 8,467,931 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.59 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -16.18 |
| Energy contribution | -17.18 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.976067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8467828 103 - 22224390 GGGUGAGGAGUUAUAUGUGCAUUUGCGUGUGUGU--GUGUGUGUAAAAACACUGCAGACAAAUAC----AGGGAAAGCAAUCCCAAAACUCAAACCCAAUGCCAAGUAC ((((...(((((......((....))((((.(((--.(((((((....)))).))).))).))))----.((((......))))..)))))..))))............ ( -33.10) >DroSec_CAF1 10472 103 - 1 GGGUGAGGAGUUAUAUGUGCAUUUGCGUGUGUGU--GUGUGUGUAAAAACAGUGCACACCAAUAC----AGGGAAAGCAAUCCCAAAACUCAAACCCAAUGCCAAGUAC ((((...((((((((..(((....)))..)))((--(((((((((.......)))))))..))))----.((((......))))..)))))..))))............ ( -34.00) >DroSim_CAF1 19697 105 - 1 GGGUGAGGAGUUAUAUGUGCAUUUGCGUGUGUGUGUGUGUGUGUAAAAACACUGCACACCAAUAC----AGGGAAAGCAAUCCCAAAACUCAAACCCAAUGCCAAGUAC ((((...((((((((..(((....)))..)))((((((((((......)))).))))))......----.((((......))))..)))))..))))............ ( -36.50) >DroEre_CAF1 16663 92 - 1 GGGUGAC---UGAUACCUGCAUU--------UGU--GUGUGUGUAAAAACACUGCACAGAAACAC----ACGGAAGCCAAUCCCGAAACUCAAACCCAAUGCCAAGUAC ((((...---(((........((--------(((--((((((......)))).))))))).....----.(((.........)))....))).))))............ ( -21.50) >DroYak_CAF1 17299 89 - 1 GGGUGAG---UGA-------AUG--------UGU--GUGUGUGUAAAAACACUGCACGGAUAUUCGUGGACGGAAAGCAAUCCCAAAACUCAAACCCAAUGCCAAGUAC (((((((---(((-------(((--------(.(--((((((((....)))).))))).))))))(.(((..(....)..))))...))))..))))............ ( -28.00) >consensus GGGUGAGGAGUUAUAUGUGCAUUUGCGUGUGUGU__GUGUGUGUAAAAACACUGCACACAAAUAC____AGGGAAAGCAAUCCCAAAACUCAAACCCAAUGCCAAGUAC (((((((.............................((((((((....)))).)))).............((((......))))....)))..))))............ (-16.18 = -17.18 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:32 2006