Locus 319

Sequence ID	X_DroMel_CAF1
Location	1,009,228 – 1,009,321
Length	93
Max. P	0.997635

overview

Window 3

Location	1,009,228 – 1,009,321
Length	93
Sequences	6
Columns	94
Reading direction	forward
Mean pairwise identity	96.86
Mean single sequence MFE	-22.33
Consensus MFE	-20.69
Energy contribution	-20.92
Covariance contribution	0.22
Combinations/Pair	1.06
Mean z-score	-2.10
Structure conservation index	0.93
SVM decision value	2.90
SVM RNA-class probability	0.997635
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1009228 93 + 22224390
-CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG
-.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60)
>DroSec_CAF1 94705 93 + 1
-CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG
-.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60)
>DroSim_CAF1 71905 93 + 1
-CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG
-.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60)
>DroEre_CAF1 105992 93 + 1
-CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAUUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG
-.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60)
>DroYak_CAF1 97495 93 + 1
-CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAGUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG
-.(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. ( -23.60)
>DroAna_CAF1 97091 94 + 1
ACAUUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGCUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCGCAAAGCAC
........((((..((((((((.(((((((.....)))..)))).)))))).((((.((((((((....)))))))).)))))).))))..... ( -16.00)
>consensus
_CGCUUCCUUGUUCGCGCAAAUAAAAUGCAAACAAUGUUUGUUUCAUUUGCGUAAUAAAAUAUUUAUACAGGUAUUUAGUUGGCCACGAAGCAG
..(((((..((..(((((((((.....((((((...))))))...))))))))(((.((((((((....)))))))).))))..)).))))).. (-20.69 = -20.92 +   0.22)

alignment

secondary structure

dotplot

Window 4

Location	1,009,228 – 1,009,321
Length	93
Sequences	6
Columns	94
Reading direction	reverse
Mean pairwise identity	96.86
Mean single sequence MFE	-20.27
Consensus MFE	-18.90
Energy contribution	-18.65
Covariance contribution	-0.25
Combinations/Pair	1.12
Mean z-score	-1.69
Structure conservation index	0.93
SVM decision value	2.16
SVM RNA-class probability	0.989336
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1009228 93 - 22224390
CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG-
..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90)
>DroSec_CAF1 94705 93 - 1
CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG-
..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90)
>DroSim_CAF1 71905 93 - 1
CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG-
..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90)
>DroEre_CAF1 105992 93 - 1
CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAAUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG-
..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90)
>DroYak_CAF1 97495 93 - 1
CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACACUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG-
..(((((.((..(......(((....))).............((((((((((((((((...)))))..))))))))))).)..))..))))).- ( -20.90)
>DroAna_CAF1 97091 94 - 1
GUGCUUUGCGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAGCAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAAUGU
.((.(((((................(((............)))((((((((((...(((.....))).)))))))))))))))))......... ( -17.10)
>consensus
CUGCUUCGUGGCCAACUAAAUACCUGUAUAAAUAUUUUAUUACGCAAAUGAAACAAACAUUGUUUGCAUUUUAUUUGCGCGAACAAGGAAGCG_
..(((((..((...........))...............(..((((((((((((((((...)))))..)))))))))))..).....))))).. (-18.90 = -18.65 +  -0.25)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:36 2006