| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,459,039 – 8,459,140 |
| Length | 101 |
| Max. P | 0.875045 |
| Location | 8,459,039 – 8,459,140 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.58 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -17.09 |
| Energy contribution | -17.68 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.875045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8459039 101 - 22224390 CUAAGUCAUGACGGUAAUUGCCUAGAACCAGGUGGGCA------CCA----UAUCAAUAUCAUCAU-AUCACGCCGCCUAAUCGAAAAUAACUGCCUCAUGAUCUUAAAAAA .((((((((((.((((.(((....((...((((((.(.------..(----(((..........))-))...)))))))..)).....))).)))))))))).))))..... ( -21.30) >DroSec_CAF1 2288 98 - 1 CUAAGUCACGGCGGUAAUUGCCUAGAACCAGGUGGGCA------CGA----UAUCAAUAUCAUCAU-AUCACGCCGCCUAAUCGAGAAUAAUUGUCUCAUGAUCUUACA--- .(((((((.((((((...((((((........))))))------.((----((....)))).....-.....)))))).....((((.......)))).))).))))..--- ( -26.80) >DroSim_CAF1 10871 100 - 1 CUAAGUCAUGGCGGUAAUUGCCUAGAACCAGGUGGGCA------CAA----UAUCAAUAUCAUCAU-AUCACGCCGCCUAAUCGAGAAUAAUUGCCUCAUGAUUUCAAAAA- ..(((((((((.((((((((.((.((...((((((.(.------..(----(((..........))-))...)))))))..)).))..)))))))))))))))))......- ( -24.10) >DroEre_CAF1 8369 95 - 1 CUAAGUCAUGGCGGUAAUUGCCUAGAACCAGGUGGGAA-----AAAA----UAUCAAUAUCAU------CACGCCGCCUAAUCGAGAAUAAUUGCCUCAUGAUCCUAAAA-- ....(((((((.((((((((.((.((...((((((...-----....----............------....))))))..)).))..))))))))))))))).......-- ( -22.70) >DroYak_CAF1 7139 102 - 1 CCAAGUCAUGGUGGUAAUUGCCUAGAAGCAGGUGGGAAUAUCAAGAA----UAUCAAUAUCAU------CACGCCGCCUAAUCGAGAGUAAUUGCCUCAUGAUCUGACAAAA .((..((((((.(((((((((((.((...((((((............----............------....))))))..)).)).)))))))))))))))..))...... ( -29.59) >DroAna_CAF1 15328 104 - 1 GCAAGUCAUUGCGUUAAUUGCAUAGAACCAGGUGGGGA------GAAAAGGUGAAAAAAUCAUCAUCACCUGGCCGGCUAAUCGAGAAUAAUUGCCUCAUGAUGCCCAGA-- (((((((..((((.....)))).....((((((((...------.....(((((.....))))).))))))))..))))....(((.........)))....))).....-- ( -25.20) >consensus CUAAGUCAUGGCGGUAAUUGCCUAGAACCAGGUGGGCA______CAA____UAUCAAUAUCAUCAU_AUCACGCCGCCUAAUCGAGAAUAAUUGCCUCAUGAUCUUAAAA__ ....(((((((.((((((((....((...((((((......................................))))))..)).....)))))))))))))))......... (-17.09 = -17.68 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:18 2006