Locus 3187

Sequence ID	X_DroMel_CAF1
Location	8,454,918 – 8,455,011
Length	93
Max. P	0.807260

overview

Window 7

Location	8,454,918 – 8,455,011
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	86.19
Mean single sequence MFE	-27.50
Consensus MFE	-20.80
Energy contribution	-20.84
Covariance contribution	0.04
Combinations/Pair	1.19
Mean z-score	-1.92
Structure conservation index	0.76
SVM decision value	0.64
SVM RNA-class probability	0.807260
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8454918 93 + 22224390
CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAAGGAAAGACAUUGACAGCGGUCCAUGGGCGGGGGCGGUGGUCGAAAAAGGGCAUAAAAG
..(((....))).......((((.((..(((....)))......(((((.((.((((........)))).)).)))))......))))))... ( -26.80)
>DroSec_CAF1 143 93 + 1
CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAAGGAAAGACAUUGACAGUGGUCCAUGGGCGGGGGCGUUGGUCCAAAAAGGGCGAAAAAG
(((((..(.(((................(((....)))....(((.(((....))).))).))).)..)))))((((.....))))....... ( -27.30)
>DroSim_CAF1 7637 93 + 1
CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAAGGAAAGACAUUGACAGUGGUCCAUGGGCGGGGGCGUUGGUCCAAAAAGGGCAAAAAAG
(((((..(.(((................(((....)))....(((.(((....))).))).))).)..)))))((((.....))))....... ( -27.30)
>DroEre_CAF1 5491 90 + 1
CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAUGGAAAGGCAGGGACAGCGGUCCAUGGGCGGGGGCGGUGGUCCGGAAGGCGCA---AAG
..(((....))).......((((.((..((((..(....)..)..((((.((.((((........)))).)).)))))))..)))))---).. ( -30.20)
>DroYak_CAF1 4786 81 + 1
CUGUGGACACGCAUUAAAAGUGUAGCAGUUCGAAAGGAAAGGCAGUGACAGCGGUCCAGGGGCGGGGGCGGUGGUCC---------A---AAG
((.(((((.(((......(.(((.....(((....)))...))).)....)))))))).))....((((....))))---------.---... ( -25.90)
>consensus
CAGCGGACACGCAUUAAAAUUGUAGCAGUCCGAAAGGAAAGACAUUGACAGCGGUCCAUGGGCGGGGGCGGUGGUCCAAAAAGGGCA_AAAAG
..((((((.(((........(((.....(((....)))...)))......))))))).(((((.(......).)))))......))....... (-20.80 = -20.84 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:17 2006