| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,451,502 – 8,451,596 |
| Length | 94 |
| Max. P | 0.647770 |
| Location | 8,451,502 – 8,451,596 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.53 |
| Mean single sequence MFE | -31.08 |
| Consensus MFE | -11.12 |
| Energy contribution | -11.58 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8451502 94 + 22224390 GCUUA------------AUAAA--AAAGGCGGUGAAAACACACUAGCGAUGGCAGUUGCGGUUGCGCUUUGCCGCCAAUAGAUC-----CGAUCGCGCGCUCGAUAGAUCGAU------- .....------------.....--...(((((..((.........(((((.((....)).)))))..))..)))))........-----(((((.((....))...)))))..------- ( -28.50) >DroSim_CAF1 4279 94 + 1 GCUUA------------AUAAA--AAAGGCGGUGAAAACACCCUAGCGAUGGCAGUUGCGGGUGCAGAUUGCCGCCAAUAGAUC-----CGAUCGGGCUUUCGAUAGAUCGAU------- .....------------.....--...(((((..(...(((((..(((((....))))))))))....)..)))))....((((-----..(((((....))))).))))...------- ( -32.80) >DroEre_CAF1 2313 103 + 1 GCUUA------------AUAAAAAAAAGGCGCUGAAAACACACUAGCGAUGACAGUAGUGGGCGCGUAUUGCCGCCAAUAUAUG-----CGCUCUUGCGAUCGAUAGAUCGAUUGCCGCC ((...------------........(((((((........(((((.(.......))))))((((.(.....))))).......)-----))).)))((((((((....)))))))).)). ( -30.90) >DroYak_CAF1 1273 102 + 1 GCUAA------------AUAAAA-AAAGGCGCUGAAAACACACUAGCGAUGAGAGUUGUGGGCGCGGAUUGCCGCCAAUAGAUU-----CGCUGUUGCGAUCGAUACAUCGAUUGCCGCC .....------------......-...((((............((((((.....((((..((((.....))))..))))....)-----)))))..((((((((....)))))))))))) ( -29.80) >DroAna_CAF1 2364 111 + 1 GCUUACGAUCGAUUGUAAAAGA--AAACGCGCUGAAAACACACCAGUGAUGACAGUUGUAGGCGCGAAUUGCCGCCAAUAGAUUGUUCACGAUCGAUUGAUCGAUAAUUCGAU------- .....(((((((((((......--.....(((((.........)))))..(((((((...((((.(.....)))))....))))))).)))))))))))(((((....)))))------- ( -33.40) >consensus GCUUA____________AUAAA__AAAGGCGCUGAAAACACACUAGCGAUGACAGUUGUGGGCGCGGAUUGCCGCCAAUAGAUC_____CGAUCGUGCGAUCGAUAGAUCGAU_______ ...........................(((...............(((((....))))).((((.....)))))))........................((((....))))........ (-11.12 = -11.58 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:16 2006